SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N14
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           49   3e-06
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.42 
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)                31   0.97 
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 31   0.97 
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_17026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)               29   3.9  
SB_25898| Best HMM Match : rve (HMM E-Value=1)                         28   5.1  
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   6.8  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   6.8  
SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)                    28   6.8  
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)                       27   9.0  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/61 (40%), Positives = 36/61 (59%)
 Frame = +2

Query: 263 KVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSVTIRVRQVDKSQV 442
           K  E   + +LDEA +RL +V +D   Y  ++  LI Q L+QL+E  V IR R+ D S V
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 443 E 445
           +
Sbjct: 128 K 128



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 446 SILARAQQDYKTKIKKDTQLKVDTESFLSPD 538
           ++   A ++YK + KK+ +L VD ++FL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 549 GVDLVAARGRIKISNTLESR 608
           G++L A +G+IK+ NTLESR
Sbjct: 235 GIELHAKQGKIKVVNTLESR 254


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 248 RLKVLKVREDHVRNVLDEARKRLAEV 325
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
          Length = 373

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 145 RAATAAEDHGILREKRKTGGTPEKNSIIKHAEPSSSQGAQXXXXXXXXCARRGSQAPG 318
           R ++AA+ H I   + KT G+P K S +  +   S   +          + +GS++PG
Sbjct: 155 RQSSAAQIHHIDTSRVKTTGSPRKASSVNRSSTFSPANSPRVTRKQITSSDKGSRSPG 212


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 145 RAATAAEDHGILREKRKTGGTPEKNSIIKHAEPSSSQGAQXXXXXXXXCARRGSQAPG 318
           R ++AA+ H I   + KT G+P K S +  +   S   +          + +GS++PG
Sbjct: 155 RQSSAAQIHHIDTSRVKTTGSPRKASSVNRSSTFSPANSPRVTRKQITSSDKGSRSPG 212


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = +2

Query: 269  REDHVRNVLDEARKRLAEVPKDTKLYSDLLT----TLIVQALFQLMEPSVTIRVRQVDKS 436
            RE+++  V++E+RKR A+  K    +SD ++     ++V+  +     S+    R   + 
Sbjct: 1231 REEYLSRVMNESRKRFADEHKRHSFHSDYMSRNKEAVLVKPAWSSSRSSLHDEQRSPPEE 1290

Query: 437  QVESILARAQQDYKTKIKKDTQ 502
            Q ES+    ++ ++ + ++  Q
Sbjct: 1291 QRESLNEEKRRSFQEENRRSFQ 1312


>SB_17026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 608 TGFQSVADLDASP----SSNKVNSNHKCPETGSSRCLPSTVCPS*SLSCNPV 465
           T F  V D DA      ++N  N  + CP    S C+PS+ CP+    C+ V
Sbjct: 186 TSFTEVDDADAEDGDDANANHSNCRYVCPSFYQSACVPSS-CPA-GYDCHDV 235


>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
          Length = 447

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 248 RLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLT 361
           R++  K   D + + L E R+RL   P+D + Y  L T
Sbjct: 120 RVQTAKKELDFIHSQLSEVRRRLDRTPRDDERYLTLAT 157


>SB_25898| Best HMM Match : rve (HMM E-Value=1)
          Length = 714

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 380 LFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKKDTQLKVDTESFLSPDTC 544
           + QLM  SV +    V  S+ +S++     + + K+K DT +  D    +S D C
Sbjct: 133 MMQLMPASVELGSVDVSASRNKSMINVTLSNRQVKVKADTVVHGDITPLVSCDAC 187


>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 596 SVADLDASPSSNKVNSNHKCPETG 525
           SVA ++ +P +N   + HKCP+ G
Sbjct: 199 SVAPIEIAPKNNSPATAHKCPKCG 222


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 9   PWRSAMQMFKSRSSI*WPSSNKRPMK---RLKKSMLRPRRSS 125
           PW S     + R+S+   S+ +RP K   R KK   RPR++S
Sbjct: 490 PWSSNKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRPRKNS 531


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 242  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYS 349
            QA L+  +  +D+++   D  +KRLA++  + ++YS
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYS 2494


>SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)
          Length = 309

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 266 VREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTL--IVQALFQLMEPSVTIRVRQVDKSQ 439
           V +DH+RNVL + R     + +   L +D   TL   + +L  L+E   T+  +Q ++ +
Sbjct: 84  VLDDHLRNVLQQHRTISDRLSRPQDLATDEHRTLSKTLSSLAPLVELIKTLEAKQKEQEE 143

Query: 440 VESIL 454
           +  ++
Sbjct: 144 LSDLI 148


>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 9   PWRSAMQMFKSRSSI*WPSSNKRPMK---RLKKSMLRPRRSS 125
           PW S     + R+S+   S+ +RP K   R KK   RPR++S
Sbjct: 127 PWSSNKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRPRKNS 168


>SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 1150

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 284 RNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSVTIRVRQVDKSQVESILARA 463
           +N LD+ARKRL E  +  K  SD +  ++   +    +P+  + V Q D+ +  +  +  
Sbjct: 5   KNPLDDARKRLNEKLESIKEQSDYIRQVLNDTVENATKPARDLLV-QRDRKKFFAKYSTV 63

Query: 464 QQD 472
            QD
Sbjct: 64  SQD 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,824
Number of Sequences: 59808
Number of extensions: 287136
Number of successful extensions: 896
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -