Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N14
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 49 3e-06
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 32 0.42
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 31 0.97
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 31 0.97
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_17026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27) 29 3.9
SB_25898| Best HMM Match : rve (HMM E-Value=1) 28 5.1
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.8
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 28 6.8
SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39) 28 6.8
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_42677| Best HMM Match : TUDOR (HMM E-Value=0) 27 9.0
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +2
Query: 263 KVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSVTIRVRQVDKSQV 442
K E + +LDEA +RL +V +D Y ++ LI Q L+QL+E V IR R+ D S V
Sbjct: 68 KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127
Query: 443 E 445
+
Sbjct: 128 K 128
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 446 SILARAQQDYKTKIKKDTQLKVDTESFLSPD 538
++ A ++YK + KK+ +L VD ++FL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 549 GVDLVAARGRIKISNTLESR 608
G++L A +G+IK+ NTLESR
Sbjct: 235 GIELHAKQGKIKVVNTLESR 254
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 248 RLKVLKVREDHVRNVLDEARKRLAEV 325
R+ LK +ED ++N+LDE R + EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172
>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
Length = 373
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 145 RAATAAEDHGILREKRKTGGTPEKNSIIKHAEPSSSQGAQXXXXXXXXCARRGSQAPG 318
R ++AA+ H I + KT G+P K S + + S + + +GS++PG
Sbjct: 155 RQSSAAQIHHIDTSRVKTTGSPRKASSVNRSSTFSPANSPRVTRKQITSSDKGSRSPG 212
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 145 RAATAAEDHGILREKRKTGGTPEKNSIIKHAEPSSSQGAQXXXXXXXXCARRGSQAPG 318
R ++AA+ H I + KT G+P K S + + S + + +GS++PG
Sbjct: 155 RQSSAAQIHHIDTSRVKTTGSPRKASSVNRSSTFSPANSPRVTRKQITSSDKGSRSPG 212
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +2
Query: 269 REDHVRNVLDEARKRLAEVPKDTKLYSDLLT----TLIVQALFQLMEPSVTIRVRQVDKS 436
RE+++ V++E+RKR A+ K +SD ++ ++V+ + S+ R +
Sbjct: 1231 REEYLSRVMNESRKRFADEHKRHSFHSDYMSRNKEAVLVKPAWSSSRSSLHDEQRSPPEE 1290
Query: 437 QVESILARAQQDYKTKIKKDTQ 502
Q ES+ ++ ++ + ++ Q
Sbjct: 1291 QRESLNEEKRRSFQEENRRSFQ 1312
>SB_17026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 608 TGFQSVADLDASP----SSNKVNSNHKCPETGSSRCLPSTVCPS*SLSCNPV 465
T F V D DA ++N N + CP S C+PS+ CP+ C+ V
Sbjct: 186 TSFTEVDDADAEDGDDANANHSNCRYVCPSFYQSACVPSS-CPA-GYDCHDV 235
>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 RLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLT 361
R++ K D + + L E R+RL P+D + Y L T
Sbjct: 120 RVQTAKKELDFIHSQLSEVRRRLDRTPRDDERYLTLAT 157
>SB_25898| Best HMM Match : rve (HMM E-Value=1)
Length = 714
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 380 LFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKKDTQLKVDTESFLSPDTC 544
+ QLM SV + V S+ +S++ + + K+K DT + D +S D C
Sbjct: 133 MMQLMPASVELGSVDVSASRNKSMINVTLSNRQVKVKADTVVHGDITPLVSCDAC 187
>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 596 SVADLDASPSSNKVNSNHKCPETG 525
SVA ++ +P +N + HKCP+ G
Sbjct: 199 SVAPIEIAPKNNSPATAHKCPKCG 222
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 9 PWRSAMQMFKSRSSI*WPSSNKRPMK---RLKKSMLRPRRSS 125
PW S + R+S+ S+ +RP K R KK RPR++S
Sbjct: 490 PWSSNKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRPRKNS 531
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 242 QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYS 349
QA L+ + +D+++ D +KRLA++ + ++YS
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYS 2494
>SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)
Length = 309
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 266 VREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTL--IVQALFQLMEPSVTIRVRQVDKSQ 439
V +DH+RNVL + R + + L +D TL + +L L+E T+ +Q ++ +
Sbjct: 84 VLDDHLRNVLQQHRTISDRLSRPQDLATDEHRTLSKTLSSLAPLVELIKTLEAKQKEQEE 143
Query: 440 VESIL 454
+ ++
Sbjct: 144 LSDLI 148
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 9 PWRSAMQMFKSRSSI*WPSSNKRPMK---RLKKSMLRPRRSS 125
PW S + R+S+ S+ +RP K R KK RPR++S
Sbjct: 127 PWSSNKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRPRKNS 168
>SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 1150
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 284 RNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSVTIRVRQVDKSQVESILARA 463
+N LD+ARKRL E + K SD + ++ + +P+ + V Q D+ + + +
Sbjct: 5 KNPLDDARKRLNEKLESIKEQSDYIRQVLNDTVENATKPARDLLV-QRDRKKFFAKYSTV 63
Query: 464 QQD 472
QD
Sbjct: 64 SQD 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,824
Number of Sequences: 59808
Number of extensions: 287136
Number of successful extensions: 896
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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