BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_N14 (610 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 49 3e-06 SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 32 0.42 SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 31 0.97 SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 31 0.97 SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_17026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27) 29 3.9 SB_25898| Best HMM Match : rve (HMM E-Value=1) 28 5.1 SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8 SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.8 SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 28 6.8 SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39) 28 6.8 SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8 SB_42677| Best HMM Match : TUDOR (HMM E-Value=0) 27 9.0 >SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) Length = 288 Score = 49.2 bits (112), Expect = 3e-06 Identities = 25/61 (40%), Positives = 36/61 (59%) Frame = +2 Query: 263 KVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSVTIRVRQVDKSQV 442 K E + +LDEA +RL +V +D Y ++ LI Q L+QL+E V IR R+ D S V Sbjct: 68 KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127 Query: 443 E 445 + Sbjct: 128 K 128 Score = 32.7 bits (71), Expect = 0.24 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 446 SILARAQQDYKTKIKKDTQLKVDTESFLSPD 538 ++ A ++YK + KK+ +L VD ++FL PD Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203 Score = 29.5 bits (63), Expect = 2.2 Identities = 12/20 (60%), Positives = 17/20 (85%) Frame = +3 Query: 549 GVDLVAARGRIKISNTLESR 608 G++L A +G+IK+ NTLESR Sbjct: 235 GIELHAKQGKIKVVNTLESR 254 >SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) Length = 739 Score = 31.9 bits (69), Expect = 0.42 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 248 RLKVLKVREDHVRNVLDEARKRLAEV 325 R+ LK +ED ++N+LDE R + EV Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172 >SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) Length = 373 Score = 30.7 bits (66), Expect = 0.97 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +1 Query: 145 RAATAAEDHGILREKRKTGGTPEKNSIIKHAEPSSSQGAQXXXXXXXXCARRGSQAPG 318 R ++AA+ H I + KT G+P K S + + S + + +GS++PG Sbjct: 155 RQSSAAQIHHIDTSRVKTTGSPRKASSVNRSSTFSPANSPRVTRKQITSSDKGSRSPG 212 >SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) Length = 820 Score = 30.7 bits (66), Expect = 0.97 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +1 Query: 145 RAATAAEDHGILREKRKTGGTPEKNSIIKHAEPSSSQGAQXXXXXXXXCARRGSQAPG 318 R ++AA+ H I + KT G+P K S + + S + + +GS++PG Sbjct: 155 RQSSAAQIHHIDTSRVKTTGSPRKASSVNRSSTFSPANSPRVTRKQITSSDKGSRSPG 212 >SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3293 Score = 29.9 bits (64), Expect = 1.7 Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = +2 Query: 269 REDHVRNVLDEARKRLAEVPKDTKLYSDLLT----TLIVQALFQLMEPSVTIRVRQVDKS 436 RE+++ V++E+RKR A+ K +SD ++ ++V+ + S+ R + Sbjct: 1231 REEYLSRVMNESRKRFADEHKRHSFHSDYMSRNKEAVLVKPAWSSSRSSLHDEQRSPPEE 1290 Query: 437 QVESILARAQQDYKTKIKKDTQ 502 Q ES+ ++ ++ + ++ Q Sbjct: 1291 QRESLNEEKRRSFQEENRRSFQ 1312 >SB_17026| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 453 Score = 29.1 bits (62), Expect = 2.9 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -3 Query: 608 TGFQSVADLDASP----SSNKVNSNHKCPETGSSRCLPSTVCPS*SLSCNPV 465 T F V D DA ++N N + CP S C+PS+ CP+ C+ V Sbjct: 186 TSFTEVDDADAEDGDDANANHSNCRYVCPSFYQSACVPSS-CPA-GYDCHDV 235 >SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27) Length = 447 Score = 28.7 bits (61), Expect = 3.9 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 248 RLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLT 361 R++ K D + + L E R+RL P+D + Y L T Sbjct: 120 RVQTAKKELDFIHSQLSEVRRRLDRTPRDDERYLTLAT 157 >SB_25898| Best HMM Match : rve (HMM E-Value=1) Length = 714 Score = 28.3 bits (60), Expect = 5.1 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = +2 Query: 380 LFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKKDTQLKVDTESFLSPDTC 544 + QLM SV + V S+ +S++ + + K+K DT + D +S D C Sbjct: 133 MMQLMPASVELGSVDVSASRNKSMINVTLSNRQVKVKADTVVHGDITPLVSCDAC 187 >SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 452 Score = 27.9 bits (59), Expect = 6.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 596 SVADLDASPSSNKVNSNHKCPETG 525 SVA ++ +P +N + HKCP+ G Sbjct: 199 SVAPIEIAPKNNSPATAHKCPKCG 222 >SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 683 Score = 27.9 bits (59), Expect = 6.8 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +3 Query: 9 PWRSAMQMFKSRSSI*WPSSNKRPMK---RLKKSMLRPRRSS 125 PW S + R+S+ S+ +RP K R KK RPR++S Sbjct: 490 PWSSNKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRPRKNS 531 >SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) Length = 2858 Score = 27.9 bits (59), Expect = 6.8 Identities = 11/36 (30%), Positives = 23/36 (63%) Frame = +2 Query: 242 QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYS 349 QA L+ + +D+++ D +KRLA++ + ++YS Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYS 2494 >SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39) Length = 309 Score = 27.9 bits (59), Expect = 6.8 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Frame = +2 Query: 266 VREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTL--IVQALFQLMEPSVTIRVRQVDKSQ 439 V +DH+RNVL + R + + L +D TL + +L L+E T+ +Q ++ + Sbjct: 84 VLDDHLRNVLQQHRTISDRLSRPQDLATDEHRTLSKTLSSLAPLVELIKTLEAKQKEQEE 143 Query: 440 VESIL 454 + ++ Sbjct: 144 LSDLI 148 >SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 320 Score = 27.9 bits (59), Expect = 6.8 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +3 Query: 9 PWRSAMQMFKSRSSI*WPSSNKRPMK---RLKKSMLRPRRSS 125 PW S + R+S+ S+ +RP K R KK RPR++S Sbjct: 127 PWSSNKDCDRERNSVKEISTTRRPRKSTHRPKKPTRRPRKNS 168 >SB_42677| Best HMM Match : TUDOR (HMM E-Value=0) Length = 1150 Score = 27.5 bits (58), Expect = 9.0 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = +2 Query: 284 RNVLDEARKRLAEVPKDTKLYSDLLTTLIVQALFQLMEPSVTIRVRQVDKSQVESILARA 463 +N LD+ARKRL E + K SD + ++ + +P+ + V Q D+ + + + Sbjct: 5 KNPLDDARKRLNEKLESIKEQSDYIRQVLNDTVENATKPARDLLV-QRDRKKFFAKYSTV 63 Query: 464 QQD 472 QD Sbjct: 64 SQD 66 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,973,824 Number of Sequences: 59808 Number of extensions: 287136 Number of successful extensions: 896 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 765 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 896 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1487884875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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