Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N11
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   3.4  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   4.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   7.9  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   7.9  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   7.9  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 102 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 7
           + KE   I+  +++I ++FLF N +++ +C VKN
Sbjct: 22  VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 329 VLGLLRTGYYSLMTSLLFPIRFKAGQLPST 418
           V+GLL    Y L+ S++FP ++   +L +T
Sbjct: 499 VVGLLSPALYILILSIIFPEKYDFNRLLAT 528


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 100 NNEEQRLTYLTEDIGFNSYYYYFHSHL 180
           + + Q++ Y+ ++   NSY  Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 33  LWNCKRGRAVCVLRQLFQH 89
           +WN + G  +C  R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 58  QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 207
           Q  ++   SN  +  N    L+  Y+T D GF S Y Y  S   +  S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,406
Number of Sequences: 5004
Number of extensions: 43897
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)