Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N11
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine rece...    27   9.4  

>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 127 LTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTR 270
           L +D  ++ YYY+   +   ++ S RY    +     Y+N Y    TR
Sbjct: 71  LYDDYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTR 118


>U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 33 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 105 IIVKESVGIVGVIHILLFLFYNSII 31
           ++   SV I+G+I ++LF FY++ +
Sbjct: 228 VVSSISVAILGIIQLVLFCFYDTFL 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,331
Number of Sequences: 27780
Number of extensions: 235572
Number of successful extensions: 599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)