Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N11
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.31 
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    31   0.54 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    30   0.71 
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    29   1.6  
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    29   2.2  
At1g31420.1 68414.m03848 leucine-rich repeat transmembrane prote...    27   5.0  
At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kina...    27   6.6  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    27   6.6  
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro...    27   6.6  
At1g02980.1 68414.m00268 cullin family protein similar to cullin...    27   6.6  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 14  TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 109
           T+QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 305 GPILEFSWVLGLLRTGYYSLMTSLLFPIRFKAGQLPSTQRKEL 433
           GP  +F+ ++G   +G  +LM ++ F +  + GQL  +Q K+L
Sbjct: 29  GPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLKDL 71


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 5   VFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 109
           V  T+QRL + E+ K+    C+ P  P+ +FT M+
Sbjct: 516 VVITLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 326 RRIQVWDPNPFVKPLEVNKRV 264
           RR+  WD N F +P E++ RV
Sbjct: 319 RRLDTWDVNSFSEPFEIHSRV 339


>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 70  YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY 207
           Y + SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWY 190


>At1g31420.1 68414.m03848 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069:
           Eukaryotic protein kinase domain
          Length = 592

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 383 PIRFKAGQLPSTQRKELRSNTVLGP 457
           PI  + G LP  Q+ ++ SNT+ GP
Sbjct: 137 PIPAEMGDLPGLQKLDMSSNTLSGP 161


>At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 815

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 356 YSLMTSLLFPIRFKAGQLPSTQRKELRS 439
           Y LM SL   IR+  G++   QR+++R+
Sbjct: 395 YDLMLSLQLGIRYTVGKITPIQRRQVRT 422


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 127 GRSTSVLHYCKGKCWNSWRNTHTALPLLQF 38
           G+    LH     C  SW N H   P+ +F
Sbjct: 151 GKELKCLHLYHSSCIVSWLNIHNTCPICRF 180


>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 588

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +1

Query: 256 QLTTRLFTSSGFTNGLGSHT*ILLGTRLIKNWLLFPDDFLTISHSV 393
           QL +     SG  N +GS T     TR    W+ FP  F  ISH V
Sbjct: 480 QLESNGARGSGSANSVGSST-----TRPKSPWMPFPTLFAAISHKV 520


>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
           [Homo sapiens] GI:3139077; contains Pfam profile
           PF00888: Cullin family
          Length = 742

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 228 WRNILQFLPTINNTFIYFERFYKRVGV-PYLNSPGYSAY*ELV 353
           W N    +  +++ F Y +RFY R G  P L++ G+ ++ +LV
Sbjct: 99  WANQKILVRWLSHFFEYLDRFYTRRGSHPTLSAVGFISFRDLV 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,533,136
Number of Sequences: 28952
Number of extensions: 215650
Number of successful extensions: 580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)