Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N10
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    29   0.40 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   5.0  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   6.6  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 479 ILCHLHHLCRPGCQIV 432
           ILC L+H C P CQI+
Sbjct: 188 ILCRLNHSCDPNCQII 203


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +2

Query: 143 NVAGITSASAVLKVRSSPEITITPSNFQQVLRGDPVSVECRANGYPDPIVSIKTSVDLRE 322
           N   ITS SA       P ++   +N ++     P + + R NG+P+P  +  TS+    
Sbjct: 77  NTINITSVSAGTNELFLPTLSHAHANDREASLFFPYT-DIRYNGFPEPSNTDSTSILSFN 135

Query: 323 VVRPSPRIAVLS 358
            +R  P   V++
Sbjct: 136 TIRLIPSTNVIN 147


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 353 LSIPSASE-----RDSGDYICVATSPAGTVEEQFGIRVDRGDGG 469
           LS P+AS      + +G  I  A+  AG  +  FGI+ + G+GG
Sbjct: 90  LSTPAASHIIRKYKLTGGIILTASHNAGGPKNDFGIKYNLGNGG 133


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 433 FFDGASR-RSCHTDIIAAITFTG*RYAKYCYPRRRPYYFT 317
           F  GA R  SC +DII++ T+      K  +P  +  Y T
Sbjct: 304 FMQGAKRLASCPSDIISSFTYENPLLPKQSFPFLQSNYVT 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,300
Number of Sequences: 5004
Number of extensions: 49386
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)