Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N10
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 31 0.73
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 29 2.2
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 29 2.2
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 29 2.9
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 28 5.1
05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562... 28 6.8
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 28 6.8
11_04_0129 - 13763651-13763911,13763978-13764327,13764448-137646... 27 8.9
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 27 8.9
09_02_0427 - 9198363-9198485,9198831-9198895,9199029-9199341,919... 27 8.9
07_03_0653 + 20297439-20298011 27 8.9
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 506 HPRCLLRLQILCHLHHLCRPGCQIVLRRCQQEKLPHRYNRR 384
H R + R + L H RP C++V RC + LPHR R+
Sbjct: 357 HGRDIARSRELLSFAHCLRP-CELVGLRCVEHYLPHRVARQ 396
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 350 VLSIPSASERDSGDYICVATSPAGTVEEQFGIRVDRGDGGD 472
V S+P + SGD A + AG EE G R G G+
Sbjct: 11 VPSVPKQEQAPSGDASTAALAVAGEGEEDAGARASAGGNGE 51
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 539 DRSGLPVPHIHHPRCLLRLQILCHLHHLCRPGCQIVLRR-CQQEK 408
D S LP H H +CL ++ CHL + R C + + C K
Sbjct: 206 DVSVLPCGHTIHVKCLREMEEHCHLKLMLRFACPLCSKSVCDMSK 250
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Frame = +2
Query: 86 LKFDHIDVNDEGEYTCTATNVAGITSASAVLKVRSSPEITITPSNFQQVLRGDPVSVECR 265
++F H GE + A AV+ T F++++ +S
Sbjct: 286 VQFGHAGAKSGGELESAQAKNQALKDAGAVVPTSYEALETAIKETFEKLVEDGKISPVTE 345
Query: 266 ANGYPDPIVSIKTSVDLREVVRPSPRIAVLSIPSASERDSGDYICVATSPAGTVEEQ-FG 442
P P +KT++ +V P+ I+ +S D G+ C A P T+ EQ +G
Sbjct: 346 ITPPPIP-EDLKTAIKSGKVRAPTHIISTIS------DDRGEEPCYAGVPMSTIIEQGYG 398
Query: 443 I 445
+
Sbjct: 399 V 399
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 326 VRPSPRIAVLSIPSASERDSGDYICVATSPAGTV-EEQFGIRVDRGD 463
+R + +IA + P ER S +AT GTV E+ G+ +D+ D
Sbjct: 336 LRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSLDKAD 382
>05_03_0471 -
14455543-14455650,14455925-14456002,14456121-14456285,
14457151-14457261,14457863-14458024,14458462-14458538,
14459526-14460177
Length = 450
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 441 PNCSSTVPAGEVATQI*SPLSRSLADGMLSTAILGDGRTTSR 316
P P +++ S S S ADG+LS A GDG + R
Sbjct: 61 PGAPQAGPPSALSSSPSSSSSSSEADGLLSAAAAGDGEVSIR 102
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 128 TCTATNVAGITSASAVLKVRSSPEITITP 214
TC+ T++ + S+ VLK+++ P + + P
Sbjct: 1042 TCSCTSIRNLNSSLKVLKIKNCPVLKVFP 1070
>11_04_0129 -
13763651-13763911,13763978-13764327,13764448-13764606,
13764677-13765160
Length = 417
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 168 LALVIPATLVAVHVYSPSSFTSI 100
++ +IPA++V V ++SP+S T I
Sbjct: 126 MSKIIPASVVLVDIFSPTSITDI 148
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 314 LREVVRPSPRIAVLSIPS-ASERDS--GDYICVATSPAGTVEEQFGIRVDRGDGGDTVF 481
L +V P++ S PS +ERDS C A + T G+ ++ +GG +VF
Sbjct: 339 LMSLVMNPPKVGDESYPSYRAERDSILSSLSCCAEAMVSTFNSMEGMTCNKAEGGISVF 397
>09_02_0427 -
9198363-9198485,9198831-9198895,9199029-9199341,
9199482-9199620,9199705-9199767,9199905-9199986,
9200079-9200157,9200996-9201175,9201261-9201520,
9201650-9201734,9201813-9201959,9202067-9202177
Length = 548
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -3
Query: 442 AKLFFDGASRRSCHTDIIAAITFTG*RYAKYCYPRRRPYYF 320
AKL + A II A TF G AK P+R PY F
Sbjct: 495 AKLCLEEADNVIAEVHIIDAQTFEGAPVAKIVLPQRVPYGF 535
>07_03_0653 + 20297439-20298011
Length = 190
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 134 TATNVAGITSASAVLKVRSSPEITITPSNFQQVLRGDPVSVEC 262
TAT VAG VLK+R+S +T + F LR + S +C
Sbjct: 143 TATTVAGKAVVLGVLKIRASSVVTCGVTVFP--LRKETTSPQC 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,577
Number of Sequences: 37544
Number of extensions: 363031
Number of successful extensions: 1049
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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