Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N10
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative sim...    31   0.80 
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof...    28   5.7  
At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative (CH...    28   5.7  
At1g10690.1 68414.m01215 expressed protein                             28   5.7  
At1g05580.1 68414.m00578 cation/hydrogen exchanger, putative (CH...    27   7.5  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   9.9  
At4g20170.1 68417.m02950 expressed protein                             27   9.9  
At2g43320.1 68415.m05386 expressed protein                             27   9.9  

>At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative
           similar to monovalent cation:proton antiporter family 2
           (CPA2) members (see PMID:11500563 for other members)
          Length = 735

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 584 CKLVLRVCG-HSLMGFDRSGLPVPHIHHPRCLLRLQILCHLHHLCRP 447
           C L+  VCG HS+ G    GL +PH H  R ++  ++   L  +  P
Sbjct: 183 CSLITEVCGVHSITGAFLFGLSIPHDHIIRKMIEEKLHDFLSGMLMP 229


>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827)
          Length = 751

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 149 AGITSASAVLKVRSSPEITITPSNFQQVLRGDPVSVECRANGYPDPIVSIKTSVD-LREV 325
           A I  AS  L+V +SP   + P + +    G P SVE    G P  ++   +  + +RE 
Sbjct: 87  ARILPASPRLRVPASPRAFVYPRSVESPRFGSPRSVESPCFGSPIGVIDTASPFESVREA 146

Query: 326 V 328
           V
Sbjct: 147 V 147


>At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative
           (CHX27)  monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 290 VSIKTSVDLREVVRPSPRIAVLSIPSASERDSGDYICVATSPAGTVEEQFGIR 448
           ++IK +VDL    R +    + +  +A + D GD ICV T+ A  V+E+   R
Sbjct: 223 IAIKLNVDLPNKNRAAFLSVLQTEMNADDNDIGDSICVPTTNA--VDEESNTR 273


>At1g10690.1 68414.m01215 expressed protein
          Length = 110

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 146 VAGITSASAVLKVRSSPEITITPSNFQQVLRGDPVSVECRANGYP 280
           +AGI S S + ++  SP +T+T +  Q      P +V  R    P
Sbjct: 26  IAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPTAVSVRIPRVP 70


>At1g05580.1 68414.m00578 cation/hydrogen exchanger, putative
           (CHX23) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 867

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 584 CKLVLRVCG-HSLMGFDRSGLPVPHIHHPRCLLRLQILCHLHHLCRP 447
           C L+   CG HS+ G    GL +PH H  R ++  ++   L  +  P
Sbjct: 294 CGLITDACGVHSITGAFLFGLSIPHDHIIRNMIEEKLHDFLSGILMP 340


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 977

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 497  CLLRLQILCHLHHLCRPGCQIVLRRC 420
            C  ++ +L + HH+ RP C    +RC
Sbjct: 923  CSSKVSVLPNNHHMSRPICSFCKKRC 948


>At4g20170.1 68417.m02950 expressed protein
          Length = 504

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -1

Query: 219 LLGVIVISGDDLTLRTALALVIPATLVAVHVYSPSSFTSI*SNFR 85
           L+GVI     +L L T +AL++  TL  +  + PSSF+   S+FR
Sbjct: 17  LVGVIWNFSAELKL-TFMALLVLCTLATLLPFIPSSFSLSTSDFR 60


>At2g43320.1 68415.m05386 expressed protein
          Length = 351

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 213 GVIVISGDDLTLRTALALVIPATLVAVHVYSPSSFTSI 100
           GV  +S  DL L T    +IP+  VA H YS  +  ++
Sbjct: 21  GVSALSEKDLQLPTPAVEIIPSKTVAHHRYSGENLDAL 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,040
Number of Sequences: 28952
Number of extensions: 271325
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)