Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N09
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    185   2e-47
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         185   2e-47
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   180   7e-46
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    33   0.11 
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote...    30   1.0  
At2g35200.1 68415.m04317 expressed protein                             30   1.0  
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    28   4.1  
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote...    28   5.5  
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    27   9.6  
At5g04700.1 68418.m00478 hypothetical protein                          27   9.6  
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta...    27   9.6  
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta...    27   9.6  
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta...    27   9.6  
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami...    27   9.6  
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein...    27   9.6  

>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  185 bits (451), Expect = 2e-47
 Identities = 83/172 (48%), Positives = 120/172 (69%), Gaps = 3/172 (1%)
 Frame = -3

Query: 576 LKEYESIGRKLPSETEPRPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 397
           L +Y+ +GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I E
Sbjct: 6   LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINE 65

Query: 396 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 217
           I EK+P  IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQI
Sbjct: 66  IFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125

Query: 216 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 70
           IK   + A+ C+R   KQFH SKI FPL     R    K   TF   +P+ +
Sbjct: 126 IKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  185 bits (450), Expect = 2e-47
 Identities = 79/146 (54%), Positives = 110/146 (75%)
 Frame = -3

Query: 570 EYESIGRKLPSETEPRPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 391
           +Y+ +GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI 
Sbjct: 8   QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67

Query: 390 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 211
           EK+P  IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK
Sbjct: 68  EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127

Query: 210 VEVIKAAACRRPQVKQFHTSKIGFPL 133
              + A  C+R   KQFH SKI FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  180 bits (438), Expect = 7e-46
 Identities = 76/146 (52%), Positives = 107/146 (73%)
 Frame = -3

Query: 570 EYESIGRKLPSETEPRPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 391
           +Y+ +GR LP+E +  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G++++I EI 
Sbjct: 8   QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67

Query: 390 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 211
           EK+P  IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK
Sbjct: 68  EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIK 127

Query: 210 VEVIKAAACRRPQVKQFHTSKIGFPL 133
              + A  C+R   KQFH SKI FPL
Sbjct: 128 TATVPAKLCKREITKQFHNSKIKFPL 153


>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 525 RPPLYQMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIKEIPEKSPV 376
           RPP++  R  +P PI +++RF +    Q +    +T E +S  E P K+ V
Sbjct: 11  RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61


>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 858

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = -3

Query: 444 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 298
           +++F+K   E+++ +E+PE + PV +  +G W   + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 501 IFSPDPIVAKSRFWYFLRQLKKFKKT 424
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 374 LTGLFSGISLMDTISPVVFLNFFNCLKKYQK 466
           LT LF G++ + T   +  L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323


>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 946

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 361 KVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENP 504
           K+ +   TL     DG  FT S+ E L L Q +   R   NR+  + P
Sbjct: 215 KLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIP 262


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -3

Query: 435 FKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGV-HNMYREYRD 298
           F+K   E+++ +E+PE + PV++  +G W   +++ G+   + RE+ +
Sbjct: 665 FEKDKQEVLN-QEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEE 711


>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
 Frame = -3

Query: 420 GEIVS-IKEIPEKSPVKIKNFGIWLRY-ES-------RSGVHNMYREYRDLSVG---GAV 277
           G+ VS IKE+PE+  V      I + + ES       R    N+Y EY  LS G   G V
Sbjct: 34  GDSVSPIKEVPEEEEVPNDPVNIQIPFIESALSTSRLRGKNTNVYYEYIQLSQGISQGRV 93

Query: 276 TQCYRDMGARHRARAHS-IQIIKVEVIKAAACRRPQV 169
            +  +D    H       I + +  ++KA AC +P++
Sbjct: 94  -EIVKDFLNHHPDSVDEWINLYETPLLKACACGKPEI 129


>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 347

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 149 LLVWNCLTCGRRHAAALITSTLMIC 223
           L+VWN LT  + HA  L  + +M C
Sbjct: 89  LIVWNALTSQKTHAIKLPCAWVMTC 113


>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 315

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 149 LLVWNCLTCGRRHAAALITSTLMIC 223
           L+VWN LT  + HA  L  + +M C
Sbjct: 27  LIVWNALTSQKTHAIKLPCAWVMTC 51


>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 377

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 149 LLVWNCLTCGRRHAAALITSTLMIC 223
           L+VWN LT  + HA  L  + +M C
Sbjct: 89  LIVWNALTSQKTHAIKLPCAWVMTC 113


>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 771

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = -3

Query: 480 VAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVH-NMYREY 304
           V K+ +  F+  +   K    ++ S+K     S  K+++    L     S V      + 
Sbjct: 74  VCKAHYQDFIHAVDDLKSLLSDVESLKSALSDSNSKLQSVAAPLLSSLDSLVEAQTVSKN 133

Query: 303 RDLSVGGAVTQCYRDMGARHRARAH 229
            DL++G AVT C R M    RA  H
Sbjct: 134 VDLAIG-AVTHCVRVMELVSRANQH 157


>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GB:AAD22369, NAM stands for No Apicla
           Meristem
          Length = 425

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -3

Query: 588 AKGELKEYESIGRKLPSETEPRPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 421
           AKG   ++     +LPS +EP PP    R F  D  V+ +  W   R  KK   TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,519
Number of Sequences: 28952
Number of extensions: 274899
Number of successful extensions: 781
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)