Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N08
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0182 + 28243881-28245406,28245460-28245505,28246309-282464...    30   1.4  
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214...    27   7.4  

>05_07_0182 +
           28243881-28245406,28245460-28245505,28246309-28246400,
           28246513-28246635,28246753-28246984
          Length = 672

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 533 LEEKVIEDHATTIRELAGFTNDLKGVIISH 444
           LE++ + DH T  RE   F+  L+G++I H
Sbjct: 320 LEKRTLVDHLTHFREEFRFSQSLRGMLIRH 349


>11_06_0553 -
           24920428-24921057,24921149-24921276,24921372-24921409,
           24921522-24921734,24921906-24921998,24922089-24922276,
           24922396-24922502,24922614-24922775,24922870-24922953,
           24923060-24923168,24923340-24923468,24923504-24923556,
           24923654-24923759,24924082-24924189
          Length = 715

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 536 YLEEKVIEDHATTIRELAGFTNDLKGVIISHDKDLS 429
           +L+E  +E H     E      +  G++++HDKD+S
Sbjct: 130 FLDEAAMEGHVIVPLEKLSLELNNGGIMLNHDKDIS 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,442,346
Number of Sequences: 37544
Number of extensions: 130867
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)