Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N08
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase pr...    27   8.8  
L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase pr...    27   8.8  
AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line hel...    27   8.8  

>U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 522 GHRRSRHDHPRISRFHKRPQRCYYKPR*GLISRSGQXRRVPPEGR 388
           GHR S    PR  R    P+ CY   + G  SR     R P EGR
Sbjct: 167 GHRSSDCPEPRKER---EPRVCYNCQQPGHTSRECTEERKPREGR 208


>L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 522 GHRRSRHDHPRISRFHKRPQRCYYKPR*GLISRSGQXRRVPPEGR 388
           GHR S    PR  R    P+ CY   + G  SR     R P EGR
Sbjct: 167 GHRSSDCPEPRKER---EPRVCYNCQQPGHTSRECTEERKPREGR 208


>AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line
           helicase protein 1 protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 522 GHRRSRHDHPRISRFHKRPQRCYYKPR*GLISRSGQXRRVPPEGR 388
           GHR S    PR  R    P+ CY   + G  SR     R P EGR
Sbjct: 167 GHRSSDCPEPRKER---EPRVCYNCQQPGHTSRECTEERKPREGR 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,593,605
Number of Sequences: 27780
Number of extensions: 128050
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)