Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N07
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0295 - 16345592-16345947,16346265-16346697                       29   1.4  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    27   7.5  
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609     27   10.0 
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170...    27   10.0 

>07_03_0295 - 16345592-16345947,16346265-16346697
          Length = 262

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 409 HELRSGPLLALQSRIPDTYFLQLEPLLMVFHQLQHTMRSSQAVDCRISV 263
           H LRS PLL     I     L+  P  +V+++   T+ S +AVD +++V
Sbjct: 149 HWLRSHPLLEYMYNISYRTALKETPFKIVYYRDPPTILSYEAVDTKVAV 197


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 334 AARVGENKYQVSWTEEPAKARSGVHEINILDEEGWA 441
           A   GE K+   W EEP K     H +    E  WA
Sbjct: 251 ATTAGEGKWSRWWPEEPGKEIQSSHLLEYRGELLWA 286


>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
          Length = 475

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +1

Query: 304 YAEVDEKPLTAARV-GENKYQVSWTEEPAKARS-GVHEINILDEEGWASLRRARRS 465
           Y  +  +P T   + G+++ +  W  E AKA+  G+H+ NI D++G A+   A ++
Sbjct: 289 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI-DDQGGAAAAAAHKA 343


>04_01_0146 +
           1701744-1701860,1702036-1702112,1702247-1702344,
           1704073-1704228,1704671-1705290,1705397-1705458,
           1705551-1705941,1706404-1706575,1706686-1707212
          Length = 739

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
 Frame = -3

Query: 165 SSTYIGKS-----K*NNNWYFIHLKAC 100
           SS+ +G+S     K NNNWY IH  +C
Sbjct: 352 SSSIVGQSLFYQPKDNNNWYEIHHSSC 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,268
Number of Sequences: 37544
Number of extensions: 215965
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)