Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N07
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            80   1e-15
SB_37522| Best HMM Match : TRAP-delta (HMM E-Value=0.11)               53   1e-07
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                28   3.4  
SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047)                  27   7.7  

>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 39/74 (52%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +1

Query: 247 YITEFSLKCDNPLPENYALYAEVDEKPLTAARVGEN-KYQVSWTEEPAKARSGVHEINIL 423
           ++TEFSL CDN   ++ +LYAEV+ K +   R  +N KYQVSW+EE  +A+SGV+ IN L
Sbjct: 272 FLTEFSLACDNNT-KDVSLYAEVNGKVMPVTRSTDNSKYQVSWSEEHKQAKSGVYTINFL 330

Query: 424 DEEGWASLRRARRS 465
           DEEG+++ R+A+RS
Sbjct: 331 DEEGYSNYRKAQRS 344


>SB_37522| Best HMM Match : TRAP-delta (HMM E-Value=0.11)
          Length = 65

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = +1

Query: 172 ESCQNPKVEATSFTSLDATVVTQIAYITEFSLKCDNPLPENYALYAEVDEKPLTAARVGE 351
           E C  PK  +TS+TS +  + ++  ++TEFSL CDN   ++ +LYAEV+ K +   R  +
Sbjct: 2   EPCVGPKATSTSYTSTNIFMSSETVFLTEFSLACDNN-AKDVSLYAEVNGKVMPVTRSTD 60

Query: 352 N-KYQ 363
           N KYQ
Sbjct: 61  NSKYQ 65


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 289 ENYALYAEVDEKPLTAARVGENKYQVS---WTEEPAKARSGVHEINILDEEGWASLRRAR 459
           EN A   + +EKP+T  + GE+ + +      E+ AK +     I+   + G+  L ++R
Sbjct: 732 ENSARTQKTEEKPVTRHKKGEDDWPMGINHGKEKQAKEKQTKEVIHTETKNGFTDLEKSR 791

Query: 460 R 462
           R
Sbjct: 792 R 792


>SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047)
          Length = 261

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 121 IPIVILLTF-AYISRGIAESCQNPKVEATSFTSLDATVVTQIAYITEFSLKC 273
           IP V L+   A  +  IAE    P +E +       TVV  I YI E ++KC
Sbjct: 141 IPSVALIAIIALFTYSIAEVA--PAIEGSMSDRSQFTVVIVITYIIEATIKC 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,337
Number of Sequences: 59808
Number of extensions: 247581
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)