Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N07
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50130.2 68418.m06208 short-chain dehydrogenase/reductase (SD...    31   0.51 
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop...    28   2.7  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   3.6  
At2g16485.1 68415.m01889 expressed protein ; expression supporte...    27   8.4  

>At5g50130.2 68418.m06208 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 277

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 460 DERGGVTPNPPHPGC*FHELRSGPLLALQSRIPDTYFLQLEPLLMVFHQLQHTM 299
           D    VT N  HPG     +++G + A +    D+ FL    LL    QLQH M
Sbjct: 226 DRNANVTINAVHPGI----VKTGIIRAHKGLFTDSLFLIASKLLKSISQLQHVM 275


>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
           chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
           5'-adenylylsulfate (APS) sulfotransferase 2 /
           3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
           homolog 43 (PRH-43) identical to SP|P92981
           5'-adenylylsulfate reductase 2, chloroplast precursor
           (EC 1.8.4.9) (Adenosine 5'-phosphosulfate
           5'-adenylylsulfate sulfotransferase 2) (APS
           sulfotransferase 2) (Thioredoxin independent APS
           reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
           reductase homolog 43) (PAPS reductase homolog 43)
           (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
           reductase homolog (PRH43) GI:1710115
          Length = 454

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 304 YAEVDEKPLTAARV-GENKYQVSWTEEPAKARS-GVHEINILDEEGWASLRRA 456
           Y  +  +P T   + G+++ +  W  E AKA+  G+H+ NI +E+G A  + A
Sbjct: 281 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEEDGAADSKPA 333


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 244 AYITEFSLKCDNPLPENYALYAEVDEKPLTAARVGENKYQVSWTEE---PAKARSGVHEI 414
           +Y  + +L     LP+NY  Y+ + ++ LTA +   N   +SW E     A +   +  I
Sbjct: 245 SYYPDQNLVSSQLLPDNYFDYSGLLDEDLTAMQEQSN---LSWFENINGAASSSDSLWNI 301

Query: 415 NILDEEGW 438
              DEE W
Sbjct: 302 GETDEEFW 309


>At2g16485.1 68415.m01889 expressed protein ; expression supported
           by MPSS
          Length = 617

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 313 VDEKPLTAARVGENKYQVSWTEEPAKARSGVHEINILD 426
           V E  L+  R+ ENK +VS  EEP+     V E+N +D
Sbjct: 139 VAEANLSGDRLEENK-EVSMEEEPSSHELSVCEVNGVD 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,357,534
Number of Sequences: 28952
Number of extensions: 178427
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)