BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_N06 (313 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 0.37 SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 2.6 SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 2.6 SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 3.5 SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 24 4.6 SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 24 4.6 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 4.6 SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 24 4.6 SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 24 4.6 SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 24 4.6 SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 24 4.6 SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 24 6.1 SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 23 8.1 SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 23 8.1 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 27.9 bits (59), Expect = 0.37 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +2 Query: 143 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 253 LSI+ AK TI + + + S++L T+W+ +LNS+G Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581 >SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 25.0 bits (52), Expect = 2.6 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +1 Query: 172 NFYQQLTTRYYFERLTNGLGSIPEF 246 NFY + YF T G+ S+P F Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150 >SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 925 Score = 25.0 bits (52), Expect = 2.6 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = +1 Query: 103 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 261 H FWWS + NL E+ NF L FE N + EFS SP Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164 >SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces pombe|chr 1|||Manual Length = 743 Score = 24.6 bits (51), Expect = 3.5 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = +1 Query: 28 NNEEQRLTYLTEDIGFNSYYYYFHSHL 108 + + Q++ Y+ ++ NSY Y HSH+ Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339 >SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 543 Score = 24.2 bits (50), Expect = 4.6 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 61 EDIGFNSYYYYFHSHLPFWWSSERYG 138 +DIG +Y L F W S+R+G Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143 >SPBC1773.08c |||mannosyltransferase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 391 Score = 24.2 bits (50), Expect = 4.6 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +1 Query: 115 WWSSERYGNLKHRRGEIYYNFYQQL--TTRYYFER 213 +WS+ N K R E Y NF++ + T ++ ER Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 24.2 bits (50), Expect = 4.6 Identities = 7/16 (43%), Positives = 11/16 (68%) Frame = +1 Query: 88 YYFHSHLPFWWSSERY 135 Y + PFWW+S+R+ Sbjct: 1469 YQLLKNNPFWWTSQRH 1484 >SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 390 Score = 24.2 bits (50), Expect = 4.6 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 31 NEEQRLTYLTEDIGF-NSYYYYFHSHLPFWWSSE 129 N + + YLT D+ + S YYY L F +++E Sbjct: 256 NGQNQSVYLTYDVPYGRSLYYYTSCALEFRFTNE 289 >SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 204 Score = 24.2 bits (50), Expect = 4.6 Identities = 9/26 (34%), Positives = 13/26 (50%) Frame = +1 Query: 229 GSIPEFSWYSPIKTGYYPLMTSYYFP 306 G P+ +Y P + YYP +Y P Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQP 132 >SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 984 Score = 24.2 bits (50), Expect = 4.6 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -1 Query: 208 RSNNVLLIVGRNCNIFRHG 152 R+N+ L+I G C +FR G Sbjct: 963 RNNDFLIIYGIGCEVFRLG 981 >SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 342 Score = 24.2 bits (50), Expect = 4.6 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Frame = -2 Query: 303 EIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 193 E V SH+ I+++L + RVP YG KT ++ C Sbjct: 35 EDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76 >SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 554 Score = 23.8 bits (49), Expect = 6.1 Identities = 8/20 (40%), Positives = 10/20 (50%) Frame = +1 Query: 202 YFERLTNGLGSIPEFSWYSP 261 YF+ LG+ F WY P Sbjct: 349 YFDNSLENLGNYNSFIWYGP 368 >SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 554 Score = 23.4 bits (48), Expect = 8.1 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = +1 Query: 4 NYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSE 129 ++S T+L + + L+ +IGF Y +Y F W S+ Sbjct: 53 DFSKTYLAKS--RILSNAMNEIGFGRYQWYLFFVAGFGWMSD 92 >SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 670 Score = 23.4 bits (48), Expect = 8.1 Identities = 8/25 (32%), Positives = 12/25 (48%) Frame = +1 Query: 115 WWSSERYGNLKHRRGEIYYNFYQQL 189 WW G H RG+ NF +++ Sbjct: 644 WWEGFVVGEDDHNRGQFPSNFVREI 668 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,278,660 Number of Sequences: 5004 Number of extensions: 23798 Number of successful extensions: 79 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 79 length of database: 2,362,478 effective HSP length: 63 effective length of database: 2,047,226 effective search space used: 81889040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -