Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N06
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 28 1.8
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 3.1
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 3.1
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 27 4.1
02_04_0244 - 21248449-21249038,21249240-21249438,21249963-212502... 26 5.4
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502... 26 7.2
01_01_0924 + 7301611-7301737,7301890-7302518 26 7.2
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 25 9.5
03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531 25 9.5
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 25 9.5
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 37 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 150
E+ + + IG Y Y + PF GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 212 VLQTAWVPYLNSLGTRLLRLVTI 280
+L A+VPYL L + LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 212 VLQTAWVPYLNSLGTRLLRLVTI 280
+L A+VPYL L + LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 7 YSNTFLYNNEEQRLTYLTEDI 69
YS + NEE RL+YL +D+
Sbjct: 465 YSTVLYHLNEEMRLSYLAQDL 485
>02_04_0244 -
21248449-21249038,21249240-21249438,21249963-21250212,
21250552-21250577
Length = 354
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 154 RGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGY 276
R Y N Q+ YY +R TNG I E + S GY
Sbjct: 17 RSRCYNNLPQEHVQLYYSQRATNGGLLIAEATGVSETAQGY 57
>04_04_0721 -
27549212-27549646,27549739-27549962,27550074-27550227,
27568477-27568821,27568899-27569152,27569257-27569383
Length = 512
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 110 LSGGVLRDMVTLSIAVAKYITIST 181
+SGG L +VT +AV +ITI T
Sbjct: 77 ISGGHLNPVVTFGLAVGGHITILT 100
>01_01_0924 + 7301611-7301737,7301890-7302518
Length = 251
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 110 LSGGVLRDMVTLSIAVAKYITI 175
+SGG L VTLS+AV +IT+
Sbjct: 76 VSGGHLNPAVTLSLAVGGHITL 97
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +1
Query: 166 YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPL 285
+Y F+ T YY +G P ++ + + TG+Y +
Sbjct: 1250 WYLFFMYFTLSYYTFYGMMAVGLTPNYNMSTVVSTGFYTM 1289
>03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531
Length = 193
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 148 HRRGEIYYNFYQQLTTRYYFE 210
HR G YY+ + T YY+E
Sbjct: 26 HRAGAYYYSSHPTSTNTYYYE 46
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 141 P*ASPWRNILQFLPTINNTLLLRASYKRL 227
P A W+ Q +P +NN L+ + S K L
Sbjct: 434 PYAYAWKGSAQLVPELNNVLIYQPSGKPL 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,772,317
Number of Sequences: 37544
Number of extensions: 132306
Number of successful extensions: 329
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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