Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N06
         (313 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   0.77 
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            27   2.3  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           27   4.1  
SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)                 27   4.1  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    26   7.2  
SB_13498| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 143 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 268
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = +1

Query: 46  LTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 213
           + Y  E + F S +  FH      W         H+  E+Y+N    L    +  R
Sbjct: 29  VVYSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEVYFNKKTSLLANVHLYR 84


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 82  YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 207
           YYYY++ +  +++    Y    H     YY +Y      YY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYY 150



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 82  YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 207
           YYYY++ +  +++    Y    H     YY +Y      YY+
Sbjct: 110 YYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYY 151



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +1

Query: 40  QRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 207
           QR  Y      +  YYYY++ +  +++    Y +  +     YY +Y      YY+
Sbjct: 99  QRHAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYY 154


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/52 (25%), Positives = 19/52 (36%)
 Frame = +1

Query: 58  TEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 213
           TE + F S +  FH      W         H+  E+Y+N    L    +  R
Sbjct: 48  TESLKFRSVHVEFHGEARTNWDEIENYTTTHKNEEVYFNKKTSLLANVHLYR 99


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 85  YYYFHSHLPFWWSSER 132
           +YYF   +  WW SER
Sbjct: 7   FYYFTKFIDIWWCSER 22


>SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)
          Length = 89

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 128 RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLR 268
           + +VTL I ++     S N+ +H    +  +  +VPY +S+ T LL+
Sbjct: 29  KSLVTLGIVISTLAENSLNSYEHTKKLAYRKKLFVPYRDSVLTFLLK 75


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 25  YNNEEQRLTYLTEDI---GFNSYYYYFHSHL 108
           Y++  Q +T +T +I     ++YYY+ H H+
Sbjct: 740 YHHHHQHITIITINILPSSSSTYYYHHHQHI 770


>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 110 LSGGVL-RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 253
           L  G+L +  V   ++V+ YI  S +    V+T  + ++  +PYL  LG
Sbjct: 468 LGAGLLAKKAVQAGLSVSPYIKTSLSPGSGVVTYYLQESGVLPYLEQLG 516


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 100 SHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGS 234
           SH  FW+SS R+     R      +    L +R  + RLT+ LGS
Sbjct: 376 SHSGFWFSSSRFS----RSSSSISDSLSSLRSRASWRRLTDVLGS 416


>SB_13498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 88  YYFHSHLPFWWSSER 132
           YYF   +  WW SER
Sbjct: 98  YYFTKFIDIWWCSER 112


>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 153 PWRNILQFLPTINNTLLLRASYKRLGFHT*ILLVLAY*DWLLSPDDFILFP 305
           PW   L   PT   TLL R   ++  F+  +L  L Y D  L  ++  LFP
Sbjct: 300 PWGKTLALFPTTATTLLRRVLGEKPRFYF-LLRQLRYYDGYLM-ENLALFP 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,199,789
Number of Sequences: 59808
Number of extensions: 164167
Number of successful extensions: 396
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)