Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N06
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.17 
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical pr...    26   4.8  
AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical...    26   6.4  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast...    25   8.4  
U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast...    25   8.4  
U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast...    25   8.4  

>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 55  LTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRY 201
           L +D  ++ YYY+   +   ++ S RY    +     Y+N Y    TRY
Sbjct: 71  LYDDYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRY 119


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 103 HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 204
           HLPF +    +  + H R EI+YN    + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 16  TFLYNNEEQRLTYLTEDIGFNSYYY----YFHSHLPFWWSSERYGNLKHRRGEIYYNFYQ 183
           +F+Y++E  RL +   D     Y+Y    YF ++  F  + +R   + +   + Y ++  
Sbjct: 92  SFVYSSEPCRLPFHFTDCEVELYFYYLTNYFSTYSVFSLTFDRL--ISYFFPKCYISYPY 149

Query: 184 QLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPL 285
           Q++      +L   LG+   F  Y   K GY P+
Sbjct: 150 QVSISLLIIQLVFTLGTY-YFGLYGVPKLGYVPI 182


>Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical
           protein C32C4.1 protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/68 (22%), Positives = 25/68 (36%)
 Frame = +1

Query: 10  SNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQL 189
           S T  +++     TY+  ++G  SYY     +   W       +  H       + +   
Sbjct: 50  STTITHDSGSNADTYMRLNVGGKSYYVRAELYTSEWTRMHELLDSSHEERLKMVDGFDSK 109

Query: 190 TTRYYFER 213
           T  YY ER
Sbjct: 110 TGEYYLER 117


>AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.7 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 148 HRRGEIYYNFYQQLTTRYY-FERLTNGL-GSIPE 243
           H  G ++Y FY  L T +   E+L  GL  S+P+
Sbjct: 111 HNAGSVHYYFYSALKTMWSPMEKLLRGLKDSLPD 144


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/67 (20%), Positives = 33/67 (49%)
 Frame = +2

Query: 107 CLSGGVLRDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLRLVTIP* 286
           C S G+   + ++++ ++  + ++     +      ++T W   + S  TRL+ LV +  
Sbjct: 14  CASEGLTNALTSITVKMSSVLVVTVILLSYYFARLAIRTLWKNNIFSNSTRLILLVCL-- 71

Query: 287 *LHTISH 307
            L++I H
Sbjct: 72  -LNSIIH 77


>Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical
           protein K02B12.6 protein.
          Length = 134

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 175 FYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 300
           +Y   +   Y E   NG  S  E ++Y+PI + Y+  M  Y+
Sbjct: 48  YYNTESYGKYDEHGNNGKDSHYEPNYYNPIASYYHSYMPKYH 89


>U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform c protein.
          Length = 317

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 94  FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 198
           FH     W +  +YG +K + G     +YN + Q+  R
Sbjct: 173 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 210


>U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform b protein.
          Length = 367

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 94  FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 198
           FH     W +  +YG +K + G     +YN + Q+  R
Sbjct: 223 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 260


>U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform a protein.
          Length = 444

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 94  FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 198
           FH     W +  +YG +K + G     +YN + Q+  R
Sbjct: 300 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,825,940
Number of Sequences: 27780
Number of extensions: 125157
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)