Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N06
         (313 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.22 
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    29   0.50 
At3g62160.1 68416.m06984 transferase family protein low similari...    29   0.66 
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    27   2.6  
At3g49220.1 68416.m05379 pectinesterase family protein contains ...    26   6.1  
At2g20000.1 68415.m02338 cell division cycle family protein / CD...    26   6.1  
At1g36310.1 68414.m04513 expressed protein                             26   6.1  
At5g41040.2 68418.m04989 transferase family protein similar to h...    25   8.1  
At5g41040.1 68418.m04988 transferase family protein similar to h...    25   8.1  

>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 282 GIVTSLNRRVPREFRYGTQAVCKT 211
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +1

Query: 10  SNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GEIYYN 174
           SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y    + K  +  GE++ +
Sbjct: 149 SNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGELHSS 208

Query: 175 FYQQLTTRYYFERLTNGLGSIPE 243
                T  Y   R  +  GS+P+
Sbjct: 209 LLSLSTIEYIDLRANSLSGSLPD 231


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 279 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 190
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/54 (20%), Positives = 24/54 (44%)
 Frame = +1

Query: 145 KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFP 306
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYP 439


>At3g49220.1 68416.m05379 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 598

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 136 GNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGS 234
           G   H RG + +N    L T YY E L +G GS
Sbjct: 518 GGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGS 550


>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
           family protein low similarity to SP|P30260|CC27_HUMAN
           Protein CDC27Hs (Cell division cycle protein 27 homolog)
           Homo sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 744

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 178 YQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 300
           YQ+       ERL   L  + E   Y+P ++  Y LM   Y
Sbjct: 658 YQKANILVCLERLDEALEVLEELKEYAPSESSVYALMGRIY 698


>At1g36310.1 68414.m04513 expressed protein
          Length = 404

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 151 RRGEIYYNFYQQLTTRYYFERLTNGLGS 234
           R+G + YN Y  + +    ERL +G+G+
Sbjct: 352 RKGAVVYNRYYHVFSEGELERLASGVGN 379


>At5g41040.2 68418.m04989 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 441

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 180 PTINNTLLLRASYKRLGFHT 239
           P++++TLL+  ++ RLGFHT
Sbjct: 368 PSLSSTLLI-TTWSRLGFHT 386


>At5g41040.1 68418.m04988 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 457

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 180 PTINNTLLLRASYKRLGFHT 239
           P++++TLL+  ++ RLGFHT
Sbjct: 384 PSLSSTLLI-TTWSRLGFHT 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,475,802
Number of Sequences: 28952
Number of extensions: 115157
Number of successful extensions: 330
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)