Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N05
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 31 0.76
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 30 1.0
12_02_0230 + 15973390-15974645,16002878-16003097 29 2.3
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 2.3
04_01_0121 + 1253201-1253584 28 4.1
05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828 28 5.4
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 27 9.4
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 27 9.4
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 27 9.4
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777... 27 9.4
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 27 9.4
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 30.7 bits (66), Expect = 0.76
Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Frame = +1
Query: 253 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 420
I NQAP PT A + P V N G+ G Y V +PTQ+ TV
Sbjct: 281 IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTVP 340
Query: 421 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTP 513
+ AP I+ T N P
Sbjct: 341 ASKARVNHVAAAEAQDAPDVILGTFLVNSVP 371
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 247 FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 408
++I P T P S P+ P V+ + R D D D V +P +P
Sbjct: 101 YQITPAKPATVTAPAAAASLPAPPPPVSARERQRRRDVDDDKPAIVLPLPPPSP 154
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Frame = +1
Query: 253 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 420
I NQAP PT A + P V N G+ G Y V +P Q+ TV
Sbjct: 54 IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTVP 113
Query: 421 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTP 513
+ AP I+ T N P
Sbjct: 114 ASKARVNHVAAAEAQDAPDVILGTFPVNSVP 144
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 199 AQANANDIDLEEINSIFKIPNQAPTTTK--KPTM 294
++A AN I +E I K+P++APT T+ KP M
Sbjct: 892 SRAEANMISVERILQYTKLPSEAPTITEGSKPPM 925
>04_01_0121 + 1253201-1253584
Length = 127
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 271 TTTKKPTMTVSAPS-AVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 408
TT K+ ++ PS A+P + T R T+ D +N+V+K Q P
Sbjct: 33 TTVKESIADLNLPSIAIPNLRTFQAMTRSVTNVDQVNAVYKAFLQPP 79
>05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828
Length = 77
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 474 WGTFNGGWFLSSSGDGYRIDCSRSLRRYFENTVYIIG 364
W FNG +L S + CSR++ YF++ Y++G
Sbjct: 43 WDDFNGPNYLFSGECSMLMSCSRAV--YFKDARYLLG 77
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 316 VPTVNTNGNRGRYDTDP-DDINSVFKIPTQAPGT 414
+PT N +G + T P D + F IP P T
Sbjct: 137 IPTANNEQQKGNFITTPKDKVAKSFDIPNNFPNT 170
>09_06_0059 -
20584196-20584288,20584389-20585055,20585411-20585732,
20585862-20586000,20586261-20586322,20586371-20586434,
20586674-20586826,20586952-20587082,20587175-20587336,
20588060-20588264
Length = 665
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 160 RILAILVLVGSAHA-QANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 321
R + + G A A +A IDLE N K P+Q T +P + V P VP
Sbjct: 417 RTASSTINAGDAQACSTSATHIDLENKNGDSKTPSQDKRETNQPPIRV-VPFPVP 470
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 259 NQAPTTTKKPTMTVSAPSAVPTV 327
++APTT K+P+ T PS P +
Sbjct: 314 SRAPTTQKQPSSTFFTPSTTPKI 336
>07_03_1115 -
24076506-24076677,24077169-24077266,24077622-24077743,
24079059-24079235,24079809-24079897,24079919-24079965,
24080423-24080519,24080600-24080682,24080716-24080796,
24081043-24081199,24081323-24081750,24081985-24082014,
24083180-24083300,24083432-24083697
Length = 655
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 192 CSRPGKRQ*YRPRRNKQH---FQNTESSTNNY*ETNHDC*CPISCSDCKYQR 338
C + G Q P + H FQ SST + + N DC C S C Y+R
Sbjct: 122 CEQCGNHQSESPNIIEAHDPRFQPDLSSTYSPVKCNVDCTCDNERSQCTYER 173
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 438 SGDGYRIDCSRSLRRYFENTVYIIGVCIIASSITV 334
S GY +C+ RY + YI+G C + ITV
Sbjct: 280 SSGGYTCECTN---RYLQGNPYILGGCNMQDHITV 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,800,728
Number of Sequences: 37544
Number of extensions: 301107
Number of successful extensions: 780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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