Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N04
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    68   5e-13
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    66   1e-12
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.20 
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   0.62 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   1.4  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   4.4  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   4.4  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    24   5.8  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   7.6  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   7.6  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    24   7.6  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    24   7.6  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 67.7 bits (158), Expect = 5e-13
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +1

Query: 127 LFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 306
           +FDK   +++ KEVP +K I+ +V+ +R+KI GSLAR A+ +L ++G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 307 YTRA 318
           YTRA
Sbjct: 81  YTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 66.1 bits (154), Expect = 1e-12
 Identities = 30/63 (47%), Positives = 47/63 (74%)
 Frame = +1

Query: 127 LFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 306
           +FDK   +++ KEVP +K I+ +V+ +R+KI GSLAR A+ +L ++G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 307 YTR 315
           YTR
Sbjct: 81  YTR 83


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.1 bits (62), Expect = 0.20
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 155  SFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFW 36
            SF Y  L NN++L  +S +   ++ F++  PPP  S+  W
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP-KSYLSW 1046


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 188 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPFDHFFFLALPPP 57
           V+ + C  +L  F ++ G+ N         T PF +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 345  LSNRVISLSRSCVDHLPMVL 286
            L+N + SL+R C D+LPM L
Sbjct: 1959 LANMINSLNRGCNDYLPMDL 1978


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 205 QRQQRV*SACTVVLPYTVSHMWV 137
           Q+Q R+     +VLP+TV  +W+
Sbjct: 75  QKQWRILRITFLVLPFTVGGLWI 97


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 202 SERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIY 309
           +ERL +  ++ R ALVEL+   LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 133 DKPTYEKLYKEVPQYKLITPAVVSERLK--IRGSLARRALVELRDKGLI 273
           +K  YE L K    Y       VS  LK  +   +A++AL +LRD GLI
Sbjct: 18  EKLVYEYLRKTNRPYSATD---VSANLKNVVSKQVAQKALEQLRDTGLI 63


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 142 TYEKLYKEVPQYKLITPAVVS 204
           TY+K+Y E P  K++   + S
Sbjct: 96  TYKKIYNEYPPTKILVQEIAS 116


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 134 SNNTWLFNLSRTFPFDHFFFLAL 66
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 172 VVLPYTVSHMWVCQTTLGCLTCHGLF 95
           V+    V + W C+TT+ CL    LF
Sbjct: 74  VIYALRVPNWWPCKTTVVCLILFLLF 99


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 184 ITPAVVSERLKIRGSLARRALVEL 255
           + PA++ + ++ R SLA+  LVE+
Sbjct: 191 VLPAIIEQIIECRDSLAQEYLVEV 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,266
Number of Sequences: 5004
Number of extensions: 21556
Number of successful extensions: 71
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)