Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N04
(345 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0) 124 3e-29
SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18) 27 5.4
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 27 5.4
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34) 27 5.4
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06) 27 5.4
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
Length = 115
Score = 124 bits (298), Expect = 3e-29
Identities = 58/72 (80%), Positives = 66/72 (91%)
Frame = +1
Query: 112 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 291
LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLKIRGSLARRAL+EL+ KGLIK+V +H
Sbjct: 41 LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKH 100
Query: 292 HGQVIYTRATKG 327
H Q+IYTRATKG
Sbjct: 101 HSQLIYTRATKG 112
>SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 223 LGSSTFQRQQRV*SACTVVLPYTVSHMWVCQTTLGCLTCHGL 98
+G S++ R + S C ++ Y SH V + GCL GL
Sbjct: 175 IGLSSYHRAVFLSSGCLPIIGYPTSHRRVVFPSSGCLPIIGL 216
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 161 LYSFSYVGLSNNTWLFNLSRTFPF-DHFFFLALPPPDPSFFFWVFCGCLAE 12
LYS++ VG++ F L +HF+ P P+ F V+C L E
Sbjct: 604 LYSYAIVGINITGMAFRLLEDGSLRNHFYNCKHDKPSPTDFHEVYCYLLYE 654
>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 176 YCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLA-LPPPDPSFFFWVF 30
Y TS ++F Y SN+T+ + + + F + F A +P PS F
Sbjct: 57 YAFTSNHTFHYTFTSNHTFHYTFTSSHTFHYAFTKAIIPSTTPSLVIITF 106
>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
Length = 1044
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 282 YLFD*TFISKFDKCSPGKGASDLQPFRDNSGCDQLVLWYFLIQFLIC 142
Y D +++ K CSPG +DL+ F C L ++ L +F +C
Sbjct: 172 YKIDGSYLEKCTDCSPG---TDLKKFAGFRACPCLPGYFRLDRFGLC 215
>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 26.6 bits (56), Expect = 5.4
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = -2
Query: 158 YSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWV 33
YS S G + N F LSR DH FFL P P F WV
Sbjct: 194 YSVSPYGWAYN---FMLSRA---DHMFFLFSPVPIEWFTLWV 229
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 167 TSLYSFSYVGLSNNTWLFNLSRTFPFDH 84
+SL+ G+SN+ WL N S T P +H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277
>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 249 DKCSPG-KGASDLQPFRDNSGCDQLVL 172
+KC PG +GA L R N+GC + V+
Sbjct: 1488 NKCVPGVRGAECLPGMRGNNGCPECVV 1514
>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
Length = 912
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = -3
Query: 169 VLPYTVSHMWVCQTTLGCLTCHGLFLLTTSSSWLCRHR 56
+LP+ W G CH L + T W C H+
Sbjct: 524 ILPWIKLQDWEAARKTGKQVCHLLSICTLIRPWACLHQ 561
>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
Length = 776
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 80 FFLALPPPDPSFFFWVFCGC 21
+F+ALPP +P + FC C
Sbjct: 528 YFVALPPHEPQVYKGEFCHC 547
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 173 CGTSLYSFSYVGLSNNTWLFNLSRTFP 93
CG + +Y GL N W+ ++R P
Sbjct: 1248 CGKRTFMPNYAGLRGNLWITRITRKKP 1274
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,803,089
Number of Sequences: 59808
Number of extensions: 174827
Number of successful extensions: 449
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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