Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N03
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   2.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.8  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   3.7  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    26   4.9  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    25   6.4  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   8.5  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    25   8.5  

>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 423 NLCQQPSGILARGISHSGNYNPLVSLVTLYQAAPHIYKRY 304
           N+    SG+++ G + +   NP   L T  Q  PHIYK +
Sbjct: 210 NIVNVMSGLIS-GATATAITNPFDMLKTRVQLEPHIYKNF 248


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 438 GCTKDNLCQQPSGILARGISHSGNYNPLVSLV 343
           GCT DN C Q   ++A  +  + N  P   LV
Sbjct: 428 GCTYDNTCSQRGSVIA-NVYFAKNKQPATKLV 458


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  DDMLAGFIFLPYGTSYVNLYYIVFG 172
           DD++ G  F   G+SY ++ Y+  G
Sbjct: 400 DDLIPGMFFFAKGSSYDDIPYVAIG 424


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 477 LSAGCFYGNLFAPCLEIPKPDGTCGCYPFDP 569
           L  GC  GNL  P LE+ +P+    C  F P
Sbjct: 60  LEVGCGVGNLVYPLLEV-QPNLKIYCCDFSP 89


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 327 PLDIVSPEIPKDCNYRNVRFHEQVFRW---VAGRGCLLYTPNF 446
           P D++     ++   RN RFH+++  W   V G   L  TP F
Sbjct: 97  PRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQF 139


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 44  VWSPCCPIGRNLPFLCGADDMLAGFIF-LPYGTSYVNLYYIVFG 172
           VW    PI RNL +     D +A   F  P   S V  Y I FG
Sbjct: 175 VWRALAPIYRNLAYASNTIDPIAFSAFRTPEEQSKVLKYLIRFG 218


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 113 LPAYHLHHTKMVDSGL*GNMETIQVFLTQFLEVSLT 6
           LP   +H  ++++ G    +ET  +FL++F EVS T
Sbjct: 277 LPHQVIHMNRLIEDGR-HFLETNILFLSEFFEVSST 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,161
Number of Sequences: 5004
Number of extensions: 61904
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)