Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N03
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 33 0.17
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 29 3.7
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 28 5.0
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 28 6.5
01_07_0214 - 42055848-42056155,42056263-42056442,42056560-420570... 28 6.5
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396... 27 8.7
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 27 8.7
04_04_1232 - 31956286-31956463,31957822-31957880,31959343-319593... 27 8.7
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 27 8.7
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 405 WVAGRGCLLYTPNFLYVDGVNTINLSAGCFYGNLFAPCLEI 527
+VAG+G +++ P F ++ V T + +A +G F+PC++I
Sbjct: 359 FVAGKGNVVHRPTFSHISSVTT-SSNASSEHGATFSPCVDI 398
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 245 PPVQVQVYRINGLTIEGFRQIL*EDQKRYNIN 150
PPV + +R+ G T+EG + D K Y +N
Sbjct: 563 PPVATESFRVEGSTMEGMQDFTFLDGKLYVLN 594
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 252 RNARVAIRNDNAPSCERSNVYICEEPLDIVSPEIPKDCNYRNVRFHEQVFR--WVAGRGC 425
RN++ I N C + + +EP P++PK + NV H+ + + RG
Sbjct: 442 RNSKHQINIHNRDKCNGGPLQVADEPSPEAVPKVPKS-SAANVEDHDDRSKPPLIQQRGR 500
Query: 426 LLYTPNFLYVDGVNTINL 479
TP + +D ++ L
Sbjct: 501 FKVTPGHVELDKAHSPGL 518
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 380 EIPRASIPLGCWQRLSFVHPELSL 451
E R +P+G WQR + VH +S+
Sbjct: 162 ERARKILPMGMWQRATLVHQHISI 185
>01_07_0214 -
42055848-42056155,42056263-42056442,42056560-42057077,
42059507-42060063
Length = 520
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 486 GCFYGNLFAPCLEIPKPDGTCGCYPFDPGLEEVG 587
G FY ++ P +P PDG G P++ + +G
Sbjct: 309 GGFYDHVPTPVTGVPSPDGIVGPPPYNFAFDRLG 342
>07_03_1174 +
24538522-24538682,24539229-24539430,24539529-24539675,
24539832-24539944,24540580-24540791,24541194-24541258,
24541581-24541751,24542543-24542887,24542980-24543173,
24543292-24543448,24543946-24544010,24544166-24544331
Length = 665
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 393 QVFRWVAGRGCLLYTPNFL-YVDGVNTINLSAGCF 494
+V+ W A G ++TP FL Y+ G ++ CF
Sbjct: 447 KVYVWYASFGSNMWTPRFLCYIQGGKAEGMNIPCF 481
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 369 YRNVRFHEQVFRWVAGRGCLLYTPNFLYVDGVNTINL 479
Y N+ E+ + WVA R + TP+F + N+ NL
Sbjct: 1542 YHNISESERTYVWVANRDNPITTPSFATLAISNSSNL 1578
>04_04_1232 -
31956286-31956463,31957822-31957880,31959343-31959385,
31959599-31959679,31959779-31959890,31960764-31960824,
31961853-31962518
Length = 399
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +3
Query: 450 YVDGVNTINLSAGCFYGNLFAPCLEIPKPDGTCGCYPFDPGLEEVG 587
+VD +NT +L AGC G L AP + P G DP LE G
Sbjct: 233 FVDFMNTSDLCAGCNKGALNAPLI---SPQGPLEVLS-DPMLEVAG 274
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 132 YGKKIKPASISSAPHKNGRFRPIGQHGDHTS 40
YGKK+ P SI+SAP + I GD TS
Sbjct: 645 YGKKMHPFSITSAPGDDYLSVHIRTRGDWTS 675
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,979,314
Number of Sequences: 37544
Number of extensions: 410007
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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