Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N03
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related...    29   3.4  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical
           protein F59B10.6 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 84  FCVVQMICWQVLFFYHMVQAM*IYIISFLVLLQ-NLAESFYSESIYPVDLDLDGWHQRNA 260
           F  V  I W VLFFY +V  + I    ++  ++ +L E    E+      +L        
Sbjct: 23  FDEVSQIFWIVLFFYVIVSMIWIMYCCYINKMELSLVEKKIEENGVARSKELQRLLDAYN 82

Query: 261 RVAIRNDNAPSCERSNVYICEE 326
           ++   N  AP+ + S++ I E+
Sbjct: 83  KITAENPTAPNPQSSSIIIPEQ 104


>U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related
           family protein 6 protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 133 WYKLCKFILYRFWSSYKIWRNPSIVSPFIL*TWTWTGGINEMLALPLEMIML-QVVRGV 306
           W +L  F  Y+ WS   +W N S      L ++ +  G++  L+ P +++++ + +RGV
Sbjct: 708 WSQL--FAFYKLWSQDFVWANESDYDTLELKSYRFRIGVHR-LSTPTDLVLITEELRGV 763


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 102 SSAPHKNGRFRPIGQHGDHTSFSNSVL 22
           SS+ ++N + R  GQ G H+S SNSV+
Sbjct: 188 SSSGYQNNQGRHQGQGGGHSSSSNSVM 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,325,769
Number of Sequences: 27780
Number of extensions: 355763
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)