Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N03
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26860.1 68414.m03276 hypothetical protein                          29   1.8  
At1g07230.1 68414.m00769 phosphoesterase family protein low simi...    29   1.8  
At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR ...    29   3.1  
At5g35805.1 68418.m04302 hypothetical protein                          28   4.1  
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein...    28   4.1  
At5g22070.1 68418.m02570 expressed protein contains Pfam profile...    28   5.5  
At2g03460.1 68415.m00304 kelch repeat-containing protein contain...    27   7.2  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    27   9.6  
At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein co...    27   9.6  

>At1g26860.1 68414.m03276 hypothetical protein
          Length = 240

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = -1

Query: 530 WDFQTRCKQVSVEAAST*INCINSVNVEKVRGVQKTTSAS----NPAEYLLVESHIPVIT 363
           W     C  ++       INC   +   +   +++T + +    +PA  +   S IP  T
Sbjct: 32  WQILAGCVPITDNLRKRGINC--EIGCSRCGALEETINHTLFLCHPARQIWALSQIP--T 87

Query: 362 ILWYLW*HYIKRLLTYINVTPL 297
           I+WY+W    K++   ++  PL
Sbjct: 88  IIWYIWKAGNKKIFDNVDKDPL 109


>At1g07230.1 68414.m00769 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 533

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 486 GCFYGNLFAPCLEIPKPDGTCGCYPFDPGLEEVG 587
           G FY ++  P   +P PDG  G  PF  G + +G
Sbjct: 317 GGFYDHVPTPVKGVPNPDGIIGPDPFYFGFDRLG 350


>At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 848

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 5   RSMILLRTELEKLVWSPCCPIGRN--LPFLCGADDMLAGFIFLP 130
           R M L+ T++EK+  SP CP      LP+    D  +  F+F+P
Sbjct: 514 RQMSLISTQVEKIACSPNCPNLSTLLLPYNKLVDISVGFFLFMP 557


>At5g35805.1 68418.m04302 hypothetical protein
          Length = 113

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 5   RSMILLRTELEKLVWSPCCPIG---RNLPFLCGADDML 109
           RS+  L TE+E L+W+  C IG   +N+ F     D++
Sbjct: 8   RSLSPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLV 45


>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 579

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 5   RSMILLRTELEKLVWSPCCPIG---RNLPFLCGADDML 109
           RS+  L TE+E L+W+  C IG   +N+ F     D++
Sbjct: 474 RSLSPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLV 511


>At5g22070.1 68418.m02570 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 362

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = -3

Query: 384 ISH--SGNYNPLVSLVTLYQA------APHIYKRYSSHNLEHYHF*WQREHFVDATRPGP 229
           +SH  SGN NP + +  L+        AP   + +S H+   Y+     + FV+ TRPG 
Sbjct: 58  LSHLSSGNPNPKLKIAFLFLTNSDLHFAPIWDRFFSGHSKSLYNVYVHADPFVNVTRPGN 117

Query: 228 G 226
           G
Sbjct: 118 G 118


>At2g03460.1 68415.m00304 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 333

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 141 LVPYGKKIKPASISSAPHKNGRFRPIGQHGDHTSFSNS 28
           +VP G+K +  + +S   K GR+  +GQ  DH  FS S
Sbjct: 183 VVPVGQKREAVAYNS---KEGRWDMVGQQMDHYKFSAS 217


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 462 LRQRRESSGCTKDNLCQQPSGILARGISHSGNYNPLVSLVTLYQAAPHIYKRYS-SHN 292
           ++QR + S    DN  QQ   +LA G+ + G  +PL       Q   H Y + S SHN
Sbjct: 421 MQQRLDLSQMGTDNN-QQYQAMLAAGLQNIGGGDPLRQQFVQLQEPHHQYLQQSASHN 477


>At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein
           contains Pfam profile PF01011: PQQ enzyme repeat
          Length = 978

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 FLVLLQNLAESFYSESIYPVDLDLDGWHQR 254
           FL LL  L+ +  S S+Y     L  WHQR
Sbjct: 6   FLTLLLFLSSAILSFSLYEDQAGLTDWHQR 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,320
Number of Sequences: 28952
Number of extensions: 326051
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)