Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N02
(409 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 30 0.16
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.37
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 2.6
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 25 4.5
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 25 4.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.0
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3... 25 6.0
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 7.9
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 7.9
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 24 7.9
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.9 bits (64), Expect = 0.16
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 214 CILGFTLSACFISRTRAVKPSLLSDSLSSTGVVPNVFL 101
CI GF ++ + +RTR + PS +LS T V+ FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPSAFK-TLSLTSVMVTSFL 361
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.7 bits (61), Expect = 0.37
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 214 CILGFTLSACFISRTRAVKPSLLSDSLSSTGVVPNVFL 101
CI GF ++ + +RTR + PS +LS + V+ FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPSAF-QTLSLSSVMVTSFL 361
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 296 DNVDQVYDAWDVKVNGAIYVWQ 231
D VD++YDAW N WQ
Sbjct: 54 DYVDEMYDAWKKDPNSVHASWQ 75
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 123 PVDDKESDNREGFTALVREMKQALN 197
P E D+ EG+ L EM ALN
Sbjct: 9 PTTTTEEDDEEGYEKLKEEMGSALN 33
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 255 YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 350
Y D P I+ V +N+ D T + NP + D
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 178 SRTRAVKPSLLSDSLSST 125
S+ RA+ SLLSDSL+ST
Sbjct: 1201 SQVRALALSLLSDSLNST 1218
>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 103
Score = 24.6 bits (51), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 165 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 284
AL+R A++ K S LP+++ I+ PSI N+
Sbjct: 2 ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 93 HSIKKTFGTTPVDDKESD 146
HSI+KT+G T DD D
Sbjct: 520 HSIRKTYGYTTHDDLGDD 537
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 384 RGSAVRKSVQFS---PPLWGYVQVYNSQMP 304
+G ++ KS S PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 24.2 bits (50), Expect = 7.9
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +3
Query: 3 EQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESDNREGFTALVREM 182
E YG DGI+LS +R + + I KT + D FT +R+M
Sbjct: 835 EMYGADGIELSPLAKERLETFTKQGYNNLPICIAKTQYSLSHDPDLKGAPTNFTVPIRDM 894
Query: 183 KQALN---VKPNMQLVISVLPNV-NSSIYFDVPSIINLVDIVNI 302
+ + + P + IS +P + Y+++ I DIV +
Sbjct: 895 RLSAGAGFIYP-LAAAISTIPGLPTKPAYYNI-DIAENGDIVGL 936
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,276
Number of Sequences: 5004
Number of extensions: 32667
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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