Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N02
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.15
12_02_0239 - 16125105-16126025,16126966-16127415 31 0.35
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 1.4
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 2.5
11_01_0232 + 1794081-1795175,1796087-1796782 28 3.3
09_02_0050 + 3600911-3601261,3603341-3604195 27 4.3
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471... 27 4.3
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 27 5.7
07_03_1383 + 26172329-26172448,26172770-26172961 27 5.7
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 27 5.7
11_04_0234 + 15187065-15188241,15188316-15188494 27 7.6
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 168 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 293
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 31.1 bits (67), Expect = 0.35
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 78 IGSFWHSIKKTFGTTPVDDKESDNREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 257
+G + + + T V + ++ E LVR+ K + + NMQL++ V+P Y
Sbjct: 310 LGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPY 369
Query: 258 FDVPSIINLVDI 293
V I DI
Sbjct: 370 IKVQRIFETCDI 381
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 168 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 293
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 168 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 293
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>11_01_0232 + 1794081-1795175,1796087-1796782
Length = 596
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 163 VKPSLLSDSLSSTGVVPNVFLMLCQKDPILE 71
++PSLL+ S+S G VP L P+LE
Sbjct: 99 LRPSLLALSVSDNGCVPQALLRFESSVPVLE 129
>09_02_0050 + 3600911-3601261,3603341-3604195
Length = 401
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 262 TSQAS*TWSTLSTSRHLTIIHLNVTPKRRTKLHRFTHRRTA 384
++ AS TL T RH+ +H+ V KLH +H TA
Sbjct: 71 SAMASLDHFTLPTIRHILSLHILVDYYGSKKLHALSHGATA 111
>01_04_0103 +
16046012-16046018,16046214-16046366,16046908-16047158,
16047509-16047631,16047818-16047931,16048153-16048315,
16048867-16049462
Length = 468
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 144 DNREGFTALVREMKQALNVKPNMQLVI-SVLPNVNSSIYFDVPSIINL 284
+N++G ++ + ++ P + + SVLP + S+ Y+ VPSI+ L
Sbjct: 289 ENQKGNSSAGHKTPKSPLAAPRCEAIAESVLPRLYSADYYTVPSIVEL 336
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 268 QAS*TWSTLSTSRHLTIIHLNVTPKRRTKLH 360
Q+ T T S+S H +++H V KR+ K H
Sbjct: 109 QSRQTGGTQSSSHHSSVVHTPVPAKRQKKSH 139
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 335 PQRGGLNCTDLRTAEPRSSTKRRR 406
P RGG R A P SS +RRR
Sbjct: 10 PARGGTAAASARAAPPSSSRRRRR 33
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = +3
Query: 165 ALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 275
AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 672 ALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 26.6 bits (56), Expect = 7.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 12 GFDGIDLSWQLP 47
GFDG+DL+W+ P
Sbjct: 154 GFDGLDLAWRFP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,457
Number of Sequences: 37544
Number of extensions: 197641
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -