Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N02
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.16
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0) 32 0.21
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 29 1.1
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 4.8
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 27 5.9
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 27 7.8
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) 27 7.8
SB_47855| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_4276| Best HMM Match : DUF288 (HMM E-Value=1e-04) 27 7.8
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 32.3 bits (70), Expect = 0.16
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +3
Query: 126 VDDKESDNREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 275
+DDK+++ +E FT V + + PN ++VI++L N + SI F V S+
Sbjct: 703 LDDKKNEPQETFTVTVSSADSNIEISPN-EVVITILDN-DVSIGFMVTSV 750
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 126 VDDKESDNREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 275
+DDKE ++ E FT + + +NVKP + + N ++SI F++ ++
Sbjct: 2157 IDDKEIEDLEAFTVTLSSDDKRVNVKPETG-TVKITDN-DASIGFELATV 2204
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +3
Query: 102 KKTFGTTPVDDKESDNREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIIN 281
+KT DD++ + E FT + M + KP+ ++++ N ++++ F V S++
Sbjct: 5260 RKTIQIPITDDQKVEGDESFTVAITSMNPNVMTKPD-TATVTIIDN-DATVGF-VESLVV 5316
Query: 282 LVDI 293
L D+
Sbjct: 5317 LEDV 5320
>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 1958
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 105 KTFGTTPVDDKESDNREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 275
K F +DD +N E F + + V P++ V V+ + ++ I FDVPSI
Sbjct: 950 KDFVIALIDDDVVENPEKFAVVFSTDDPRVTVDPSIPFVTVVITDNDAMIGFDVPSI 1006
>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 31.5 bits (68), Expect = 0.27
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -1
Query: 247 LFTFGKTLITNCILGFTLSACFISRTRAVKPSLLSDSLS---STGVVP-NVFLMLCQKDP 80
++TFG + +C G+T C I++ + V PSL + + T VP + ++ C K
Sbjct: 290 IYTFGNETVCDCNPGYTGQRCTINK-QCVVPSLNTGEIGGKYETERVPGSKMVLFCNKG- 347
Query: 79 ILERIFFGFLFGNCQDRSIPSKPYCS 2
I + FG C D S S PY S
Sbjct: 348 ----ISLSWRFGVCVDGS--SSPYWS 367
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 9 YGFDGIDLSWQLPKRKPKKIRSSIGSF 89
+GFDG+DL W+ P + +S G F
Sbjct: 133 HGFDGLDLDWEYPGMRGGSPKSDKGRF 159
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 12 GFDGIDLSWQLPKRKPKKIRSSIGSF 89
GFDG+DL W+ P + +S G F
Sbjct: 519 GFDGLDLDWEYPGMRGGSPKSDKGRF 544
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 278 YDAWDVKVNGAIYVWQNADN*LHIGFY-IECLFHLTYKSGEAFSIV*FLIIHRGSPECFL 102
YD W+ N I++ A L + + +E LF+ Y AFSIV L H+ P L
Sbjct: 1214 YDLWEQSQN--IFIDYKAMAKLRVQYNAVEELFYFDYTQNPAFSIVKSLAKHKPFPNPLL 1271
Query: 101 DAV 93
++
Sbjct: 1272 SSL 1274
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 28.7 bits (61), Expect = 1.9
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Frame = +3
Query: 3 EQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESDNREGFTALVREM 182
++Y FDG DL W+ P + G +P DK+ FT L EM
Sbjct: 509 DKYDFDGFDLDWEYPASR-------------------GNSPPQDKQH-----FTILCEEM 544
Query: 183 ------KQALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAFDYYTP 326
K A KP M L +V + ++V + ++D +N+ +D + P
Sbjct: 545 LDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHKLAGILDWINLMTYDLHGP 599
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 23.4 bits (48), Expect(2) = 4.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 69 RSSIGSFWHSIKKTFGTTPVDDKESDNREGFTA 167
R +G+FW S + +GT K N F A
Sbjct: 127 RDQLGNFWGSFRVLYGTPKGWPKHMFNTISFDA 159
Score = 22.2 bits (45), Expect(2) = 4.8
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +3
Query: 258 FDVPSIINLVDIVNIQAFD 314
+D+ +I+++VD + I A+D
Sbjct: 171 YDLKAIVDIVDFMVIMAYD 189
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 9 YGFDGIDLSWQLP 47
+GFDG+DL W+ P
Sbjct: 130 WGFDGLDLDWEYP 142
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 123 PVDDKESDNREGFTALVREM 182
P DDK ++ R FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085
>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
Length = 441
Score = 26.6 bits (56), Expect = 7.8
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 356 SLVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 183
S+ F T + +I + C DV+ V + + V VNG QNA+ + + F + F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306
Query: 182 HLTYKSGEAF 153
H K +AF
Sbjct: 307 HHIAKMLQAF 316
>SB_47855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 226 LITNCILGFTLSACFISRTRAVKPSLLSDSLSSTGV-VPNVFLMLCQKDPILERIFF 59
L C+L F S+ R A + +L TG+ VP+V L LC+ +L F+
Sbjct: 6 LYLQCLLAFWSSSSGYLRDNAGDSRCIMKALKPTGIPVPDV-LALCEDPSVLGSSFY 61
>SB_4276| Best HMM Match : DUF288 (HMM E-Value=1e-04)
Length = 687
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 24 IDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDD-KESDNREGFTALV 173
+DL W K KPK +S + W I T P DD K+ +G+ +V
Sbjct: 143 VDLDWSSIKMKPKPEKSEMNDKWVVI--TTINYPTDDVKKLAKMDGWKVVV 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,437
Number of Sequences: 59808
Number of extensions: 241177
Number of successful extensions: 950
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -