Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N02
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 35 0.024
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 31 0.22
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 31 0.30
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 30 0.69
At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family pro... 30 0.69
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 29 1.2
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 29 1.2
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 29 1.6
At1g67790.1 68414.m07736 expressed protein 29 1.6
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 28 2.1
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 28 2.1
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 27 3.7
At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containi... 27 3.7
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 23 4.5
At2g33570.1 68415.m04114 expressed protein 27 4.8
At2g07710.1 68415.m00998 hypothetical protein 27 4.8
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a... 27 6.4
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 27 6.4
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 26 8.5
At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family pr... 26 8.5
At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C... 26 8.5
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 34.7 bits (76), Expect = 0.024
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Frame = +3
Query: 9 YGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESDNREGFTALVREMKQ 188
YGF G+DL W+ P + FGT RE +A+V E
Sbjct: 130 YGFHGLDLDWEYPSSATEMTN-------------FGTLL--------REWRSAVVAEASS 168
Query: 189 ALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAFDYYTPERNPKEAD*TAPI 365
+ KP + L +V + N S+ + V ++ + +D VN+ A+D+Y P + + A +
Sbjct: 169 S--GKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGPGWS-RVTGPPAAL 225
Query: 366 YAPQNRDPLQNA 401
+ P N P +A
Sbjct: 226 FDPSNAGPSGDA 237
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 31.5 bits (68), Expect = 0.22
Identities = 28/106 (26%), Positives = 46/106 (43%)
Frame = +3
Query: 9 YGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESDNREGFTALVREMKQ 188
YGF G+DL W+ P+ + + G + + ES N G TAL+ +
Sbjct: 109 YGFHGLDLDWEYPRNEEEMY--DFGKLLEEWRSAV------EAES-NSSGTTALI--LTA 157
Query: 189 ALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTP 326
A+ N Q + + V +I N +D +N+ A+D+Y P
Sbjct: 158 AVYYSSNYQ-----------GVPYPVLAISNSLDWINLMAYDFYGP 192
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 31.1 bits (67), Expect = 0.30
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +3
Query: 153 EGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPER 332
E + A V E N P + + + V +I + +D VNI A+D+Y P
Sbjct: 152 EEWRAAVVEESDKTNQLPLLLTAAVYYSPQYDGVEYPVKAIADNLDFVNIMAYDFYGPGW 211
Query: 333 NPKEAD*TAPIYAPQN 380
+P A + P N
Sbjct: 212 SPVTGPPAALFHDPSN 227
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 29.9 bits (64), Expect = 0.69
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 9 YGFDGIDLSWQLPK 50
YGFDG+DL W+ P+
Sbjct: 22 YGFDGLDLDWEYPR 35
>At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family
protein
Length = 420
Score = 29.9 bits (64), Expect = 0.69
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 12 GFDGIDLSWQLPKRKPKKIRSSI 80
GF GI ++W L K PK++R S+
Sbjct: 30 GFAGISVAWHLLKESPKELRLSV 52
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 258 FDVPSIINLVDIVNIQAFDYYTPERNPKEAD*TAPIYAPQN 380
+ V +I + +D VNI A+D+Y P +P A ++ P N
Sbjct: 179 YPVQAIADNLDFVNIMAYDFYGPGWSPVTGP-PAALFDPSN 218
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 177 EMKQALNVKPNMQLVISVL-PNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEAD* 353
E + + KP + L +V +V + + V + +D VNI A+D+Y P + K
Sbjct: 154 EAESRRSSKPTLLLTAAVYYSSVYKTFTYPVQVMRESLDWVNIIAYDFYGPVSSSKFTVP 213
Query: 354 TAPIYAPQNRD 386
TA ++ N +
Sbjct: 214 TAGLHVSSNNE 224
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 314 VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 183
+K DVD + + ++ W N +Y+ + DN I IE +F
Sbjct: 358 IKKWDVDKIRKFHERWYFPANATLYIVGDIDNIPRIVHNIEAVF 401
>At1g67790.1 68414.m07736 expressed protein
Length = 576
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Frame = -1
Query: 250 ELFTFGKTLITNCILGFTLSACFISRTRAVKPSLL----------SDSLSSTGVVPNVFL 101
E F + + N ILG TLS +++ R VK +L + +S T V V L
Sbjct: 182 EKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTCMQQIPYFKQTQQISITEVQDKVTL 241
Query: 100 MLCQKDPILERIFF 59
+L K P+ E +FF
Sbjct: 242 LLLSKPPV-EPLFF 254
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 28.3 bits (60), Expect = 2.1
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +3
Query: 153 EGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAF 311
+ F L+RE + A+ KP + L +V + + S+ V ++ + +D VN+ A+
Sbjct: 147 DNFGKLLREWRLAVEAEARSSGKPRLLLTAAVFYSYSYYSVLHPVNAVADSLDWVNLVAY 206
Query: 312 DYYTPERNPKEAD*TAPIYAPQNRDPLQNA 401
D+Y + AP+Y P P +A
Sbjct: 207 DFYESGSSRVTCS-PAPLYDPITTGPSGDA 235
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 103 LMLCQKDPILERIFFGFLFGNCQ 35
L+L K P LE + GF FG C+
Sbjct: 336 LLLSNKAPFLESLHLGFRFGECR 358
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 111 FGTTPVDDKESDNREGFTALVREMKQALNVKPNMQLV-----ISVLPNVNSSIYFDVPSI 275
FG D+K +D+ +G + + L + PN QL+ S +PN S + + P +
Sbjct: 44 FGWQNFDNKINDHNDGCMNMHNSFFEGLLIDPNDQLLPDPWSKSTIPNAKSELLENFPFL 103
Query: 276 INL 284
N+
Sbjct: 104 DNM 106
>At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 641
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 199 TLSACFISRTRAVKPSLLSDSLSSTGVVPNVFLMLC 92
T+ AC++ A + L+ + + G PNV +LC
Sbjct: 215 TVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLC 250
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 23.0 bits (47), Expect(2) = 4.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 12 GFDGIDLSWQLP 47
GF G+DL+W+ P
Sbjct: 101 GFYGLDLAWEYP 112
Score = 22.6 bits (46), Expect(2) = 4.5
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +3
Query: 123 PVDDKESDN----REGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVD 290
P +D E +N + + + V Q ++P + + +S+ + V +I +D
Sbjct: 112 PNNDVEMNNFGKLLQEWRSAVEVESQRTGIRPLLLTAAVYYTSDYNSVSYPVQAINRSLD 171
Query: 291 IVNIQAFDYY--TPERNPKEAD*TAPIYAPQNRDP 389
VN+ A+++Y T E P A +Y P + P
Sbjct: 172 WVNLIAYEFYGLTTEIGP-----PAGLYDPSIKGP 201
>At2g33570.1 68415.m04114 expressed protein
Length = 496
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 396 FVEDRGSAVRKSVQFSPPLWGYVQVYNSQMPGC 298
++ + G+++R Q P WGY +VY + C
Sbjct: 147 WISNNGTSIRAKAQKILPDWGYGRVYTVVVVNC 179
>At2g07710.1 68415.m00998 hypothetical protein
Length = 150
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 286 STLSTSRHLTIIHLNVTPKRRTKLHRFT 369
STL +SR LT H + TP+ + H F+
Sbjct: 31 STLRSSRRLTTSHNHSTPRSSSSHHHFS 58
>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
annotation temporarily based on supporting cDNA
gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
splice variant S and SWITCH1 splice variant L (SWI1)
GI:16033413 and GI:16033410
Length = 639
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 144 DNREGFTALVREMKQALNVKPNMQLVISVLPN 239
D RE +L RE+K+ + K +LVI PN
Sbjct: 418 DIREELASLKRELKKLASKKEEEELVIMTTPN 449
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 26.6 bits (56), Expect = 6.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 9 YGFDGIDLSWQLPK 50
Y FDG+DL W+ PK
Sbjct: 119 YRFDGLDLVWKYPK 132
>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1304
Score = 26.2 bits (55), Expect = 8.5
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +3
Query: 57 PKKIRSSIGSFWHSIKKTFGTTPVDDKESDNREGFTALVREMKQALNVKPNMQLVISVLP 236
P +R IG F KKT P D K+ + T + + L PN ++ +
Sbjct: 106 PSHVRKQIGEFGKVFKKTCEDKPADQKQRWVK-ALTDISNIAGEDLRNGPNDAHMVEKIA 164
Query: 237 NVNSSIYFDVPSIINLVDIVNIQ 305
N S+ F P D+V I+
Sbjct: 165 NDVSNKLFHPPK--GFGDLVGIE 185
>At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 Helix-loop-helix
DNA-binding domain
Length = 414
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 307 HLTIIHLNVTPKRRTKLHRFTHRRTA 384
HL+I+H N+T +T L+ F + T+
Sbjct: 351 HLSILHTNITTMEQTVLYSFNVKITS 376
>At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C,
putative similar to GB:CAB90633 from [Fagus sylvatica]
Length = 442
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 405 RRRFVED----RGSAVRKSVQFSPPLWGYVQVYNSQMPGC 298
RRR +ED S VRK +FS W Y VY+ GC
Sbjct: 129 RRRDMEDAVALHPSFVRKQTEFSRTRWHYFGVYDGH--GC 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,628,234
Number of Sequences: 28952
Number of extensions: 166355
Number of successful extensions: 539
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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