Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N01
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 47 2e-06
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 42 7e-05
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 32 0.053
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 30 0.28
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 2.0
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 3.5
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 26 3.5
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 25 6.1
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 25 6.1
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 25 8.1
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 47.2 bits (107), Expect = 2e-06
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Frame = -1
Query: 572 VPTLKE--DDGFVLWESRAIACYLAEKYGTDDQF-YPKDLKRRALVNQRLYFDSSALYVK 402
VPTL + ++ + +WES AI YLA+KY T+ + P+D V Q L+F +S +
Sbjct: 55 VPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQYLFFQASGQGII 114
Query: 401 IRAICFPIIFLGETEIK--EPLRDDLNVTLGFLDLFLKESKWVAGDSLTIADTS 246
+ ++ E I R+++ LG L+ LK+ ++ + TIAD S
Sbjct: 115 WGQAGWFSVYHQELVISAITRYRNEIKRVLGVLEDILKDRDYLVANRFTIADLS 168
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 41.9 bits (94), Expect = 7e-05
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = -1
Query: 572 VPTLKE--DDGFVLWESRAIACYLAEKYGTDDQF-YPKDLKRRALVNQRLYFDSSALYVK 402
VPTL + ++ + +WES AI YLA+KY TD + D + Q L+F +S V
Sbjct: 55 VPTLVDHKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYYKLIQYLFFQASGQGVI 114
Query: 401 IRAICFPIIFLGETEIK--EPLRDDLNVTLGFLDLFLKESKWVAGDSLTIADTS 246
+ F E + R+++ LG L+ LK+ ++ + TIAD S
Sbjct: 115 WGQAGWFNFFHHEPVVSAVTRYRNEIKRVLGVLEDILKDRDYLVANKYTIADLS 168
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 32.3 bits (70), Expect = 0.053
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = -1
Query: 572 VPTLKEDDGFVLWESRAIACYLAEKYGTDDQFYPKDLKRRALVNQRLYFDSSALYVKIRA 393
+P DGF L E+ AIA YLA T + +A V Q F +S L R
Sbjct: 52 MPVFVGKDGFPLSETLAIAFYLASLNKT-RALNGTTAEEKAKVLQYCSFTNSELPGAFRP 110
Query: 392 ICFPIIFLGETEIKEPLRDDLNVTLGF--LDLFLKESKWVAGDSLTIAD 252
I P +F + + + + L F D L ++ G LT+AD
Sbjct: 111 IIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLAD 159
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 29.9 bits (64), Expect = 0.28
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 102 NKFSK*FCTFIIFSSTWYSGAFFNPPLNIGETVNIPTYSQYGGY--RCI 242
N+ + CT II S W A N+GE + I T SQ + RC+
Sbjct: 151 NRLASTLCTKIIMKSNWLYDALVELDNNMGENLIIHTSSQKSTFLLRCV 199
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 158 RSIL*STFEYWGNCQYPNLQPVWWIQMHKWMCLQL 262
++I+ S + W + Q+ N+ +WW+ C Q+
Sbjct: 297 QAIIQSPSQDWRSSQFKNILGIWWVTRLNATCKQI 331
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 561 KGRRWICFMGKSCYCLLLSGKVWYRRS 481
K RW+ K YC++ SGK+ + +S
Sbjct: 1059 KNNRWVAGYWKKKYCIVDSGKLIFYKS 1085
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 317 RG*HLGHLLKVPLFLSHQEKLL 382
RG LGH LKV +F SH E ++
Sbjct: 228 RGLPLGHPLKVEIFNSHTEYII 249
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 206 DIDSFPNIQRWIKECSGIP 150
D+ P QRWI+ SG+P
Sbjct: 376 DLQRLPAFQRWIQLVSGLP 394
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 548 GFVLWESRAIACYLAEKYGTDDQFYPKDL 462
G LW SR + +AE +G F+PK +
Sbjct: 216 GDQLWMSRFLLHRIAEDFGVKISFHPKPI 244
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -1
Query: 299 LKESKW-VAGDSLTIADTSIYASVSTILAVGWDI---DSFPNIQRWIKE 165
+K W AG A TS Y + + +DI SF N+ RW+KE
Sbjct: 59 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKE 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,600
Number of Sequences: 5004
Number of extensions: 48664
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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