Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N01
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 53   2e-07

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
 Frame = -1

Query: 572 VPTLKEDDGFVLWESRAIACYLAEKYGTDDQFYPKDLKRRALVNQRLYFDSSALYVKIRA 393
           +P L+  +G   + S  I  YLA    + D+ Y  DL +R  V+Q L   +      + A
Sbjct: 49  LPLLETKEG-TFFSSNTIIRYLA---ASSDKLYGSDLFQRGQVDQWLDITTCDFEAAVAA 104

Query: 392 ICFPIIFLGETEIKEPLRDDLNVTLGFLDLFLKESKWVAGDSLTIADTSIYASVSTILAV 213
           +   I   G       +  D+N  LGF++  L   K++ GDS+TIAD S+  S++ IL  
Sbjct: 105 VA--IAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIAVILTS 162

Query: 212 GWDIDSFP--NIQRW 174
             D D  P  NI  W
Sbjct: 163 LGDEDRKPYQNIVSW 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,926
Number of Sequences: 59808
Number of extensions: 326362
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)