Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M24
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   2.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   5.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   7.3  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 449 TIVKNTTNMRLPVDRITSIP 390
           TI+K+TTN+ L V+  TS+P
Sbjct: 547 TIIKSTTNVYLKVNSETSLP 566


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -1

Query: 338 KFCFIKLHLNIVI*SLNVTMISSPTINAHCIFPSLYRLF 222
           +FC ++ +L+ ++ S+    + SP     C+F   + +F
Sbjct: 355 QFCHVRSYLSAILPSVCRIFLPSPGTVVFCVFDVTFAMF 393


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 94  SCRSN*LERFSNKSFNKAIYIHT*LLSAV*HSFRSFKCKTFQKNKRYSEGNIQCAF 261
           SCRS  L + ++KS N  ++     L  + H   S  CK   +    +  N +  F
Sbjct: 451 SCRSLSLLKVASKSLNSLLHQSNVRLKIINHFTGSISCKESSEFSNQTTENSEMEF 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,174
Number of Sequences: 5004
Number of extensions: 38900
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)