BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_M24 (455 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.79 SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42) 29 2.4 SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082) 28 4.2 SB_44917| Best HMM Match : DUF156 (HMM E-Value=3) 27 7.4 SB_24350| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-06) 27 9.7 >SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1300 Score = 30.3 bits (65), Expect = 0.79 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = -3 Query: 267 NHKRTLYISFTVP-FVFLKSFTLKTSKR 187 NHKRTLY++F P F+ LK+ K S++ Sbjct: 353 NHKRTLYLTFVRPHFLELKASVFKRSEK 380 >SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42) Length = 1172 Score = 28.7 bits (61), Expect = 2.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -3 Query: 435 YHKYAAARRQNYLHSTYYV--LSIHTLYTINFVLKILFHKITLEYSHIITQ 289 Y + A R YL+S Y+V + I + + +N VL +L + E + T+ Sbjct: 518 YSTFEAIDRDGYLYSVYFVSLIVIGSFFMLNLVLGVLSGEFAKERERVETR 568 >SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082) Length = 842 Score = 27.9 bits (59), Expect = 4.2 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +1 Query: 184 HSFRSFKCKTFQKNKRYSE 240 HSF+S +CK FQ KRYS+ Sbjct: 285 HSFKS-RCKCFQSVKRYSD 302 >SB_44917| Best HMM Match : DUF156 (HMM E-Value=3) Length = 1198 Score = 27.1 bits (57), Expect = 7.4 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = -3 Query: 423 AAARRQNYLHSTYYVLSIHTLYTINFVLKILFHKITLEYSHIITQ 289 A RR+NY+H Y +++ + + + L + I + Y + TQ Sbjct: 54 AQQRRRNYMHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQ 98 >SB_24350| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-06) Length = 325 Score = 26.6 bits (56), Expect = 9.7 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -3 Query: 417 ARRQNYLHSTYYVLSIHTLYTINFVLKILFHKITLEYSHI----ITQCNND 277 A+RQ + HS YV+ L T + + +LF ++ E+ + + QCN + Sbjct: 274 AKRQRF-HSDVYVICRVMLLTSHVIHPLLFWSVSSEFRRVTKVLLCQCNRE 323 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,907,501 Number of Sequences: 59808 Number of extensions: 260833 Number of successful extensions: 497 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 496 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 920703675 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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