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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M24
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.79 
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         29   2.4  
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    28   4.2  
SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)                      27   7.4  
SB_24350| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-06)                 27   9.7  

>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 267 NHKRTLYISFTVP-FVFLKSFTLKTSKR 187
           NHKRTLY++F  P F+ LK+   K S++
Sbjct: 353 NHKRTLYLTFVRPHFLELKASVFKRSEK 380


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 435 YHKYAAARRQNYLHSTYYV--LSIHTLYTINFVLKILFHKITLEYSHIITQ 289
           Y  + A  R  YL+S Y+V  + I + + +N VL +L  +   E   + T+
Sbjct: 518 YSTFEAIDRDGYLYSVYFVSLIVIGSFFMLNLVLGVLSGEFAKERERVETR 568


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 184 HSFRSFKCKTFQKNKRYSE 240
           HSF+S +CK FQ  KRYS+
Sbjct: 285 HSFKS-RCKCFQSVKRYSD 302


>SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)
          Length = 1198

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 423 AAARRQNYLHSTYYVLSIHTLYTINFVLKILFHKITLEYSHIITQ 289
           A  RR+NY+H  Y +++   +  + + L    + I + Y  + TQ
Sbjct: 54  AQQRRRNYMHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQ 98


>SB_24350| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-06)
          Length = 325

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 417 ARRQNYLHSTYYVLSIHTLYTINFVLKILFHKITLEYSHI----ITQCNND 277
           A+RQ + HS  YV+    L T + +  +LF  ++ E+  +    + QCN +
Sbjct: 274 AKRQRF-HSDVYVICRVMLLTSHVIHPLLFWSVSSEFRRVTKVLLCQCNRE 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,501
Number of Sequences: 59808
Number of extensions: 260833
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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