Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M24
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical pr...    30   0.92 
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      27   4.9  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      27   4.9  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    27   4.9  
AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical...    27   4.9  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    27   4.9  
Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical
           protein F18F11.4 protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = -3

Query: 408 QNYLHSTYYVLSIHTLYTINFVLKILFHKITLEYSHIITQCNND*FANHKRTLYISF--- 238
           Q Y+H T     ++  YT+  V+ +  H IT  Y H +  C    F     T+ I F   
Sbjct: 157 QPYIHLT---TELNDEYTVIPVIDVRLHPITHHYPHTLGVCLQPIFFFTDWTVIIQFFES 213

Query: 237 ------TVPFVFLKSFTLKTSKRMLNSTQQS 163
                 T  + +L S+T +T K++LN  +QS
Sbjct: 214 WIAQGATKFYFYLHSYTWQT-KKVLNFYKQS 243


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 384 YVLSIHTLYTINFV-LKILFHKITLEYSHIITQCNND*FANHKRT 253
           Y+L  HTL+TI F+   I+   IT+ Y HI  +  +D   N  RT
Sbjct: 560 YLLRGHTLFTILFLSASIIIFVITVTY-HIKVRRQHDIIHNELRT 603


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 384 YVLSIHTLYTINFV-LKILFHKITLEYSHIITQCNND*FANHKRT 253
           Y+L  HTL+TI F+   I+   IT+ Y HI  +  +D   N  RT
Sbjct: 560 YLLRGHTLFTILFLSASIIIFVITVTY-HIKVRRQHDIIHNELRT 603


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 264 GWRTNHCYIE 293
           GW+T+HCYIE
Sbjct: 93  GWKTHHCYIE 102


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 264 GWRTNHCYIE 293
           GW+T+HCYIE
Sbjct: 85  GWKTHHCYIE 94


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 264 GWRTNHCYIE 293
           GW+T+HCYIE
Sbjct: 93  GWKTHHCYIE 102


>AC087081-15|AAK66031.1|  267|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.4 protein.
          Length = 267

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = -3

Query: 399 LHSTYYVLSIHTLYTINFVLKIL-----FHKITLEYSHIITQCNND*FANHKRTLYISFT 235
           LH + Y+  I   YT+ F++ IL      H   +E+S+ I    N  +  H    ++SF 
Sbjct: 132 LHISIYIEDIK--YTVKFLMDILKAQKCAHIKKIEFSYSI----NSKYIEHLFH-FVSFQ 184

Query: 234 VPFVFLKSFTLKTSKRMLNSTQQSGMYINCLIKTF 130
           +   ++  F++KT+ ++ ++      +  C+IK +
Sbjct: 185 I---YMSDFSIKTATQIRDNMLNRRTFSKCIIKIY 216


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 264 GWRTNHCYIE 293
           GW+T+HCYIE
Sbjct: 93  GWKTHHCYIE 102


>Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical
           protein T08G3.10 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 247 IQCAFMVGELIIVTLSDYMTIFKCNFMKQNF*NKI-NCV*SMNG-QYIISGMEVILSTG 417
           IQC   V E + +  +  M + +C F+K     KI   V S NG + +IS    IL +G
Sbjct: 115 IQCITKVTERLAIWYAVAMAVLRCLFIKLPINKKIYGLVHSKNGIRLLISVTAAILPSG 173


>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 HNKWNGGNSVDGQP 422
           + KWN GN VDG+P
Sbjct: 382 YRKWNLGNGVDGKP 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,699,044
Number of Sequences: 27780
Number of extensions: 215226
Number of successful extensions: 461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)