Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M24
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26330.1 68414.m03211 hypothetical protein                          30   0.85 
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain...    28   2.6  
At4g30370.1 68417.m04315 zinc finger (C3HC4-type RING finger) fa...    27   6.0  
At1g67110.1 68414.m07635 cytochrome P450, putative similar to Cy...    27   6.0  
At5g41300.1 68418.m05019 receptor-like protein kinase-related co...    27   7.9  
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t...    27   7.9  

>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 22  ASISRSTNPLLK-FTPFACQNSVKQSCRSN*LERFSNKSFNKAIYIH 159
           +S+     P +K F P    N +  SC+S  L +FS + F+K +  H
Sbjct: 250 SSLPSEKPPQMKIFIPIQETNRLPDSCKSKPLSKFSEEVFHKELLFH 296


>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 174

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 19  SASISRSTNPLLKFTPFACQNSVKQSCRSN*LERFSNKSFNKAIYIH 159
           S+S SRS +P    TP  C + V++S R+N      + S N+  +I+
Sbjct: 127 SSSKSRSRSPPSPSTPETCPSCVERSIRNNGCYVHRSPSHNQLYFIN 173


>At4g30370.1 68417.m04315 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 176

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 38  PQTPY*NLRHSPVKILSNKAAGLIN*KDSQIKVLIRQFIYI 160
           P  P  N ++ P KILSN   GLI      I V I  FI+I
Sbjct: 19  PPPPKANTKNLPTKILSNFLIGLI-----MIPVAITAFIFI 54


>At1g67110.1 68414.m07635 cytochrome P450, putative similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
          Length = 512

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 429 KYAAARRQNYLHSTYYVLSIHTLYTINFVLKIL 331
           K++ A  +NY H+   VL+I   Y +  VLK L
Sbjct: 478 KFSFAISENYRHAPIVVLTIKPKYGVQLVLKPL 510


>At5g41300.1 68418.m05019 receptor-like protein kinase-related
           contains weak similarity to receptor-like protein kinase
           homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26
          Length = 287

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 253 IVYFLHCTVCFSEKFYT*NFE 191
           I+Y++ C V +S+KF+   FE
Sbjct: 119 IIYYIDCMVRYSDKFFLSTFE 139


>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02847: MA3 domain
          Length = 263

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 203 SVKLFRKTNGTVKEIYNVRL 262
           +V+L RKTN  ++E +NVRL
Sbjct: 101 TVELSRKTNSLLEEYFNVRL 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,677,228
Number of Sequences: 28952
Number of extensions: 180592
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)