Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M23
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    31   0.14 
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   4.1  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   5.4  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   7.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.2  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   7.2  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   7.2  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 233 VKCHIKC-YNYCSLAHHFLTIRVRRVCISRLET 138
           V+C ++  Y  C+LA  F+T R+R+  + RLET
Sbjct: 889 VECALETIYQVCALADDFMTSRIRQDLLPRLET 921


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 159 YPAYSNGEKVMSKGTIVIAFYMTFHGIGY 245
           YPAY N E + +   +++AF      +GY
Sbjct: 276 YPAYQNEEGINALRNVLVAFSWKNQEVGY 304


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 159 YPAYSNGEKVMSKGTIVIAFYMTFHGIGY 245
           +P+Y N  KV     IV+  +  F  +GY
Sbjct: 469 FPSYQNPNKVEMNWAIVVLGFTVFFCVGY 497


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 2   AGGDYKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYY 136
           A GD+K       + ++ A  EFN YD    S+    ++ L P Y
Sbjct: 184 AKGDWKLCGFSFSQSVESARYEFNDYDFGIPSSLQQSMDFLAPEY 228


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 8   GDYKHLLKEGDEEIKKAVLEFN 73
           G+Y+HL    + E+K+ + EFN
Sbjct: 786 GNYEHLFVSTNSELKQQLSEFN 807


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 443 INICKYIKSVTILNNEYITTPLKMCQYNLIIKIKLF 336
           I+  KY+    I + E ITTP  +C  +   ++ L+
Sbjct: 233 IHTAKYLLGHIIDDEEIITTPASVCSEDYAQEVNLY 268


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 377 KMCQYNLIIKIKLFY*HNNYALKLIYISSYINQ 279
           K+C    I+ + LFY    Y   ++Y S Y+ Q
Sbjct: 69  KLCLLCGIVTLLLFYFSGLYRTTIVYPSRYVQQ 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,164
Number of Sequences: 5004
Number of extensions: 37813
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)