Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M23
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323...    53   1e-07
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055...    31   0.77 
08_02_1082 + 24225592-24226422                                         27   7.2  

>06_03_0471 +
           21130839-21130869,21131013-21131127,21132228-21132309,
           21132444-21132648,21133237-21133296,21133420-21133472,
           21133589-21133711,21133844-21133913,21134012-21134090,
           21134172-21134253,21134272-21134310
          Length = 312

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/51 (50%), Positives = 34/51 (66%)
 Frame = +2

Query: 8   GDYKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYI 160
           G Y HL+ + D+E  K +  FN+YDLY+KS    D+E + PYY SLIEK I
Sbjct: 252 GAYMHLMNDEDKENLKWLRVFNKYDLYSKSNERIDVEKVKPYYMSLIEKRI 302


>02_05_1231 -
           35104832-35105002,35105104-35105167,35105267-35105557,
           35105755-35105999,35106410-35106489,35106890-35107006,
           35107150-35108002,35108081-35108161
          Length = 633

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 197 LAHHFLTIRVRRVCISRLETRSKAR---ELLCPGSRRSLCTSRIG*TREQL 54
           + H+    R+RR+  SRL   ++ R   E+ C G++ SLC  ++  TR ++
Sbjct: 279 IPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRV 329


>08_02_1082 + 24225592-24226422
          Length = 276

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 62  LEFNQYDLYTKSAAIPDIEALWP 130
           L+F+ Y   TKS A PD+   WP
Sbjct: 225 LDFSDYPSITKSLADPDLHFEWP 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,412,912
Number of Sequences: 37544
Number of extensions: 194837
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)