Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M23
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7066| Best HMM Match : DUF706 (HMM E-Value=2.3)                     56   2e-08
SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   29   3.2  
SB_5401| Best HMM Match : DUF652 (HMM E-Value=3)                       29   3.2  
SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)                 28   5.6  
SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5)                   27   9.7  
SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)             27   9.7  

>SB_7066| Best HMM Match : DUF706 (HMM E-Value=2.3)
          Length = 191

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 59  VLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYIPGVL 172
           + EFN+YDLY+KS  +PDI+ L PYYE LI KY PG L
Sbjct: 7   IREFNKYDLYSKSDDVPDIDDLVPYYEHLISKYCPGKL 44


>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 80  DLYTKSAAIPDIEALWPYYESLIEKYIPGVLEW*ESDEQGNNSYSILYDISR 235
           D  T   AI  +E    + ES+ +   P + E  E+DE  +  YS LYD+SR
Sbjct: 343 DDLTYEDAINHLEQSARHLESMTD---PIIYELVEADEDNDTHYSRLYDLSR 391


>SB_5401| Best HMM Match : DUF652 (HMM E-Value=3)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  KEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESL 145
           K GD E +K + E     +  +    P  EALWPYY+S+
Sbjct: 191 KGGDCE-RKVLQELGIPHVNLELYGCPKYEALWPYYDSI 228


>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
          Length = 407

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
 Frame = -3

Query: 443 INICKYIKSVTILNNEYITTPLKMCQYNLIIKIKLFY*HN-------NYALKLIYISSYI 285
           +NI KY KSV  +   Y+   L    Y L + +++            N    +IYISS I
Sbjct: 277 LNISKYWKSVITMGYVYLFLVLCYLPYMLTLGVRVLIGLTKEYKLVLNITTSVIYISSSI 336

Query: 284 NQFL 273
           N FL
Sbjct: 337 NPFL 340


>SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5)
          Length = 165

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 425 IKSVTILNNEYITTPLKMCQYNLIIKIKL 339
           I  VT++    IT PL +CQ  L+ K++L
Sbjct: 67  IIGVTVVLRTCITLPLAICQNKLVAKLEL 95


>SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)
          Length = 653

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 16  QTPSKRRRRGDQESCSRV*PIRLVHKERRDP 108
           Q P+K  R G +E  S+  P RL   ER+ P
Sbjct: 332 QKPNKMLRHGGEEDFSKNKPYRLGFTERKSP 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,141,387
Number of Sequences: 59808
Number of extensions: 256486
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)