Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M23
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna bin...    27   8.6  
AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna bin...    27   8.6  
AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna bin...    27   8.6  

>AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical
           protein K11D12.6 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -3

Query: 230 KCHIKCYNYCSLAHHFLTIRVRRVCISRLETRSKA---RELLCPGSRRSLCTSRIG 72
           KC     NYC   HH        VC S LE+R K    REL+CP  ++   T R G
Sbjct: 104 KCAEPNKNYC---HH--GPNNNGVCCS-LESRKKVDQDRELVCPNGKKKYATFRGG 153


>AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform a protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  YKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIE 118
           + HL +  DEEI K  +   Q +   +SA +PD E
Sbjct: 48  FHHLERLADEEINKVRVVLFQCEFSKESAPLPDAE 82


>AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform c protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  YKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIE 118
           + HL +  DEEI K  +   Q +   +SA +PD E
Sbjct: 90  FHHLERLADEEINKVRVVLFQCEFSKESAPLPDAE 124


>AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform b protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  YKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIE 118
           + HL +  DEEI K  +   Q +   +SA +PD E
Sbjct: 48  FHHLERLADEEINKVRVVLFQCEFSKESAPLPDAE 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,921,571
Number of Sequences: 27780
Number of extensions: 208474
Number of successful extensions: 448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)