Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M23
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26260.1 68417.m03779 expressed protein similar to myo-inosit...    64   6e-11
At2g19800.1 68415.m02313 expressed protein similar to myo-inosit...    62   2e-10
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...    60   7e-10
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...    58   3e-09
At1g37000.1 68414.m04612 hypothetical protein                          28   3.4  
At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    28   4.5  
At1g09280.1 68414.m01037 expressed protein contains Pfam profile...    28   4.5  
At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2...    27   6.0  

>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 29/57 (50%), Positives = 38/57 (66%)
 Frame = +2

Query: 8   GDYKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYIPGVLEW 178
           G+Y HL+ E D+E  K +  FN+YDLY+KS    D+E + PYY SLI+KY P  L W
Sbjct: 261 GEYTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVDVEKVKPYYMSLIKKYFPENLRW 317


>At2g19800.1 68415.m02313 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/57 (47%), Positives = 37/57 (64%)
 Frame = +2

Query: 8   GDYKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYIPGVLEW 178
           G Y HL+ + D +  K +  FN+YDLY+KS  + D+E + PYY SLI KY P  L+W
Sbjct: 261 GAYTHLMNDEDRDDLKWLHVFNKYDLYSKSKVLVDVEQVKPYYISLINKYFPAKLKW 317


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 28/57 (49%), Positives = 37/57 (64%)
 Frame = +2

Query: 8   GDYKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYIPGVLEW 178
           G Y HL+ E D+E  K +  FN+YDLY+KS    ++E + PYY SLI+KY P  L W
Sbjct: 258 GAYTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYYMSLIKKYFPENLRW 314


>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 26/55 (47%), Positives = 34/55 (61%)
 Frame = +2

Query: 14  YKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYIPGVLEW 178
           YKHL+   D E  K +  FN+YDLY+KS    ++E + PYY SL  KY P  L+W
Sbjct: 257 YKHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311


>At1g37000.1 68414.m04612 hypothetical protein
          Length = 219

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
 Frame = -3

Query: 434 CKYIKSVTILNNEYITTPLKMCQYNLIIKIK-LFY*HNNYALKLIYI-----SSYINQFL 273
           C  + + TIL N + + P  +   N I+  + ++Y H +    L+Y+     SSY +   
Sbjct: 54  CLNLYATTILLNVFNSCPSIIISKNRIMCSQDIYYLHRSDPKPLLYVVKQTPSSYKSIAA 113

Query: 272 **ISILLCNITYTVKCHIKCYNYCSLAHHFLTIRVRRVCISRLETRSKARELLCPGSRRS 93
              + +L  +   +K       + S  H  +T+ +     S +E  S  R+L C  S  S
Sbjct: 114 RTRAAVLLRVVL-LKTRSLAMVHLSTLHSLMTVTILSSIDSFMEDPSSNRDLTCVKSPSS 172

Query: 92  LC 87
           +C
Sbjct: 173 IC 174


>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 26  LKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESL 145
           LKE ++E+  A  E N Y+   K   +P+I+     Y+ L
Sbjct: 779 LKEKEDELHSAETEKNHYEDIMKDKVLPEIKQAETIYKEL 818


>At1g09280.1 68414.m01037 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341)
          Length = 581

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 35  GDEEIKKAVLEFNQYD--LYTKSAAIPDIEALWPYYES 142
           GD E K+ + +  QY   LY K  ++PD++ L  +YES
Sbjct: 7   GDHE-KQRIEDEEQYGVLLYYKYTSVPDLDELVSFYES 43


>At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b
           protein [Arabidopsis thaliana] GI:509423
          Length = 429

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = +2

Query: 26  LKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYY 136
           +++ +EE ++ VL+ ++YD     AA+  ++ L+ +Y
Sbjct: 144 MEDMEEEQEEPVLDIDEYDANNSLAAVEYVQDLYDFY 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,788,137
Number of Sequences: 28952
Number of extensions: 174041
Number of successful extensions: 347
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)