Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M21
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.4  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   3.2  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   4.2  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   4.2  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.2  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.6  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   5.6  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   7.4  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   7.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.8  

>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
 Frame = -1

Query: 320 LGFYCTSYPWNI-----LVNVRIYAGDVY*AAFI---RSKANNTDGFKCVAHFIHQGSSG 165
           +GF  T   WN+     LVN    AG ++  A     ++ A   D   CV   I  G   
Sbjct: 86  IGFSTTITEWNLHTGKPLVNQDSNAGAIWSIAICDETKTLAVGCDDGSCVLFDISGGPGV 145

Query: 164 VTFARVLASFTSR 126
           + F RVL   TSR
Sbjct: 146 IEFKRVLMRQTSR 158


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 235 SVPKLTTPMASNVLPTSYIRGPPESPLHESLPAS 134
           SV    T   S V+P+S I   P     ES PAS
Sbjct: 208 SVVDSATSSVSTVIPSSIISAAPPDSASESTPAS 241


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 238 LSVPKLTTPMASNVLP-TSYIRGPPESPLHESLPASPPAHSCPLFITT 98
           +S PK TT   S   P T  I   PES   +S+  S  +HS P+ + +
Sbjct: 42  VSCPKYTTIYTSGTSPDTKTIY--PESTSTKSITTSTQSHSSPVIVVS 87


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -2

Query: 235 SVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFAP 89
           S+P  TT  AS+ L TSY      +  + SL A P     P    +  P
Sbjct: 350 SLPTFTTNSASSGLSTSYTNNNDTTSDNNSLQAVPRLDPVPSLTLSSTP 398


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 140 SFTSRAQLPVIYNNLCTFTQCPLRCLTVLSTKVWNF 33
           SF SR Q+P +        + P +CL       WN+
Sbjct: 384 SFKSRFQMPTVEEGFTNVEEVPFKCLKDYE-DTWNY 418


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 238 LSVPKLTTPMASNVLP-TSYIRGPPESPLHESLPASPPAHSCPLFITT 98
           +S PK TT   S   P T  I   PES   +S+  S  +HS P+ + +
Sbjct: 42  VSCPKYTTIYTSGTSPDTKTIY--PESTSTKSITTSTQSHSSPVIVVS 87


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 244 PHLSV-PKLTTPMASNVL--PTSYIRGPPESPLHESLPASPP 128
           P LS  PK     ++NV    TS+   P  SPLH+S  A+ P
Sbjct: 275 PSLSFQPKKARYESANVSFNDTSFTNVPTSSPLHQSTTANHP 316


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = -2

Query: 271 VYTPGMFTEPHLSVP----KLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLF 107
           V+TPG FT P    P    +   P  SN    S     P+SP   S   + P+ S P+F
Sbjct: 441 VFTPGKFTIPSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSVVSNGENKPS-SSPVF 498


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 160 PLHESLPASPPAHSCPLFITTFAPSR 83
           P+  ++P SP +   P++ TTF  S+
Sbjct: 305 PVSPNIPVSPSSSFVPMYPTTFPSSK 330


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 232 VPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFIT-TFAPS 86
           V + TTP     LP S I+ PP  P+ +  PA+  +   P   T  F PS
Sbjct: 337 VQRKTTPKIQR-LPPSSIQIPPPKPM-QKFPANAASSESPPNATGNFLPS 384


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -2

Query: 265 TPGMFTEPHL--SVPKLTTPMASNVLPTSYIRGPP---ESPLHESLPASPPA 125
           TP + T P L  S P    P A   LP      PP    +P+   LPA  PA
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPA 465


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 241 HLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCP 113
           + S+P +  PMA   +  + +  P ++ L    P + PA+  P
Sbjct: 223 YYSIPAVNHPMAGQPIAIAPVPAPNQAALPPIPPQALPANGTP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,204
Number of Sequences: 5004
Number of extensions: 48298
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)