Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M21
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60030.1 68416.m06704 squamosa promoter-binding protein-like ... 30 0.89
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 1.2
At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex... 29 1.6
At3g24550.1 68416.m03083 protein kinase family protein contains ... 29 1.6
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 29 1.6
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 29 1.6
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 29 1.6
At2g27070.1 68415.m03252 two-component responsive regulator fami... 29 2.7
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 28 3.6
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family... 28 3.6
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 4.8
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d... 28 4.8
At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containi... 28 4.8
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 27 6.3
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 27 6.3
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 27 6.3
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF... 27 6.3
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 8.3
At1g60250.1 68414.m06785 zinc finger (B-box type) family protein... 27 8.3
At1g08980.1 68414.m01001 amidase family protein similar to compo... 27 8.3
>At3g60030.1 68416.m06704 squamosa promoter-binding protein-like 12
(SPL12) identical to squamosa promoter binding
protein-like 12 [Arabidopsis thaliana] GI:6006395;
contains Pfam profiles PF03110: SBP domain, PF00023:
Ankyrin repeat
Length = 927
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 273 SYIRRGCLLSRIYPFQS*QHRWLQMCCPLHTS 178
SYIR GC++ IY Q + W ++CC L S
Sbjct: 438 SYIRPGCIVLTIYLRQD-EASWEELCCDLSFS 468
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 193 PTSYIRGPPESPLHESLPASPPAHSC 116
P + PP SP+H S P PP+ C
Sbjct: 675 PEVHYHSPPPSPVHYSSPPPPPSAPC 700
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = -2
Query: 271 VYTPGMFTEPHLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFA 92
VY+P + P P + P P + PP P++ S P P P++ T
Sbjct: 479 VYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPP 538
Query: 91 P 89
P
Sbjct: 539 P 539
>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
extensin family protein similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
contains Pfam PF00560: Leucine Rich Repeat domains
Length = 433
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 217 TPMASNVLPTSYIRGPPESPLHESLPASPPAHSCP 113
+P S + P+S P SP L PPA CP
Sbjct: 381 SPPPSQISPSSQPLAPAPSPTSPPLSTPPPARPCP 415
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 235 SVPKLTTPMASNVLP-TSYIRGPPESPLHESL-PASPPAHSCP 113
S P TTP + P T+ PP SPL SL P SPP P
Sbjct: 33 SPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTP 75
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +3
Query: 126 AGGEAGKDSCKGDSGGPLMYEVGNTFEAIGVVSFGTDKCGSV 251
AG EAG G G VG + IG VSF DK G V
Sbjct: 566 AGSEAGTLWDDGAFDGVRKVSVGQAQDGIGAVSFVYDKAGQV 607
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +3
Query: 126 AGGEAGKDSCKGDSGGPLMYEVGNTFEAIGVVSFGTDKCGSV 251
AG EAG G G VG + IG VSF DK G V
Sbjct: 566 AGSEAGTLWDDGAFDGVRKVSVGQAQDGIGAVSFVYDKAGQV 607
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 262 PG-MFTEPHLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFAPS 86
PG FT P ++ P TP+ S + P S + +PAS P S P+ TF+ +
Sbjct: 331 PGDKFTFPAVTAPLSGTPLDSTSTLFTASSAPVSSSSQDPVPASIPISSAPV-PQTFSVT 389
Query: 85 RNVLCAA*QFSLP 47
+A F++P
Sbjct: 390 STSTVSATGFNVP 402
>At2g27070.1 68415.m03252 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 575
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 15 KVKQHVKVPYFGRENCQAAQRTLREGAKVVINNGQLCAGGEAGKDS 152
K+ + VPY REN + + R K V++ G+ + GKDS
Sbjct: 254 KILAIMNVPYLTRENVASHLQKYRLFVKRVVHQGRFSMLSDRGKDS 299
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 271 VYTPGMFTEPHLSVPKLTT--PMASNVLPTSYIRGPPESPLHESLPASPPAHSCP 113
V P + T P + P TT P A + PTS SP ++ ASPPA P
Sbjct: 32 VTPPPVATPPPAATPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAPTASPPAPEGP 86
>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
protein Common family member: At2g32840 [Arabidopsis
thaliana]
Length = 332
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 229 PKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAH 122
P L+T + V P + +R PP P P PP +
Sbjct: 16 PSLSTASETPVTPVNTVRPPPSQPPPAPPPLPPPTY 51
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 244 PHLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCP 113
P S P P+ S P + PP P++ P PP HS P
Sbjct: 529 PVYSPPPPPPPVHS---PPPPVHSPPPPPVYSPPPPPPPVHSPP 569
>At4g29090.1 68417.m04163 reverse transcriptase, putative /
RNA-dependent DNA polymerase, putative similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278;
contains Pfam profile PF00075: RNase H
Length = 575
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 39 PYFGRENCQAAQRTLREGAKVVINNGQ 119
P F ++ A+Q LR+GA+ V+ NG+
Sbjct: 107 PSFVWKSIHASQEILRQGARAVVGNGE 133
>At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q9FNS4 PsbB mRNA maturation
factor Mbb1, chloroplast precursor {Chlamydomonas
reinhardtii}; contains Pfam profile: PF00515: TPR Domain
Length = 652
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 203 KCVAHFIHQGSSGVTFARVLASFTSRAQLPVIYNNLCTFTQ 81
KC+A++ G V ++L+ + A+ ++Y C TQ
Sbjct: 193 KCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQ 233
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = -2
Query: 262 PGMFTEPHLSVPK-LTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFAPS 86
P F+ PH P + P P + PP SP PP H P T AP
Sbjct: 35 PPPFSPPHHPPPPHFSPPHQPPPSPYPHPHPPPPSPYPHPHQPPPPPHVLPPPPPTPAPG 94
Query: 85 RNVL 74
+V+
Sbjct: 95 HHVI 98
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 187 SYIRGPPESPLHESLPASPPAHS 119
SY RG P P H+ P AHS
Sbjct: 355 SYTRGSPSHPSHDEFDRYPRAHS 377
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -2
Query: 214 PMASNVLPTSYIRGPPESPLHESLPASPP---AHSCPLFITTFAPS 86
PM P + + PP SP+H P P P+F+ FAP+
Sbjct: 424 PMPIMGSPFANLGMPPPSPIHSLTPGMSPIPGTSVTPVFMPPFAPT 469
>At2g33780.1 68415.m04143 VQ motif-containing protein contains
PF05678: VQ motif
Length = 204
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 181 IRGPPESPLHESLPASPPAHSCP 113
+ G P++P H+ P PP HS P
Sbjct: 53 LTGIPKNPTHQPDPRFPPFHSIP 75
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 193 PTSYIRGPPESPLHESLPASPPAHSCP 113
P + R PP P+H P S P HS P
Sbjct: 486 PVKFRRSPPPPPVHSPPPPS-PIHSPP 511
>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
contains similarity to zinc finger protein GI:3618320
from [Oryza sativa]
Length = 251
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 157 LHESLPASPPAHSCPLFITTFAPSRNVLCAA*QFSLP 47
+H A PP C L + PSR L QF+ P
Sbjct: 176 IHSHEDAVPPHSRCKLCVICKRPSRRFLIGGYQFNFP 212
>At1g08980.1 68414.m01001 amidase family protein similar to
component of chloroplast outer membrane translocon Toc64
[Pisum sativum] GI:7453538; contains Pfam profile
PF01425: Amidase; supporting cDNA
gi|11493701|gb|AF202077.1|AF202077
Length = 425
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 222 SFGTDKCGSVNIPGVYTNIYEYIP 293
S GTD GSV +P Y I+ + P
Sbjct: 129 SIGTDTGGSVRVPASYCGIFGFRP 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,207
Number of Sequences: 28952
Number of extensions: 249024
Number of successful extensions: 880
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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