Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M20
(540 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 52 2e-07
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 52 3e-07
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 52 3e-07
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 50 1e-06
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 50 1e-06
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 48 5e-06
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 48 5e-06
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 46 1e-05
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 46 2e-05
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 46 2e-05
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 46 2e-05
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 43 1e-04
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 43 1e-04
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 43 1e-04
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 42 2e-04
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr... 42 2e-04
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr... 42 2e-04
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 41 5e-04
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 41 6e-04
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 40 8e-04
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr... 39 0.002
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr... 39 0.002
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 39 0.002
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 39 0.002
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 39 0.002
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 39 0.002
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 39 0.002
At4g27120.2 68417.m03898 expressed protein 39 0.002
At4g27120.1 68417.m03897 expressed protein 39 0.002
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 38 0.003
At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family pr... 38 0.003
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr... 38 0.004
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr... 38 0.004
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 38 0.006
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 38 0.006
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 38 0.006
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re... 37 0.007
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr... 37 0.010
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 37 0.010
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 37 0.010
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 36 0.013
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 36 0.023
At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family pr... 36 0.023
At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family pr... 35 0.030
At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family pr... 35 0.040
At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family pr... 34 0.053
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 34 0.053
At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family pr... 34 0.070
At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family pr... 34 0.070
At4g01720.1 68417.m00223 WRKY family transcription factor simila... 34 0.070
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 33 0.12
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763... 33 0.16
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 31 0.37
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 31 0.37
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 0.37
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr... 31 0.37
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 31 0.37
At3g28770.1 68416.m03591 expressed protein 31 0.49
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr... 31 0.49
At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family pr... 31 0.49
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 31 0.49
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr... 30 0.86
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 30 0.86
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr... 30 0.86
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 30 0.86
At2g44200.1 68415.m05500 expressed protein 30 0.86
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 30 0.86
At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family pr... 30 0.86
At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family pr... 30 0.86
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 30 0.86
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 30 0.86
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 30 1.1
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 30 1.1
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p... 30 1.1
At3g29075.1 68416.m03637 glycine-rich protein 29 1.5
At5g63720.1 68418.m07998 hypothetical protein 29 2.0
At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family pr... 29 2.0
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 29 2.0
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 29 2.0
At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing... 29 2.0
At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family pr... 29 2.0
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr... 29 2.6
At3g30725.1 68416.m03909 expressed protein ; expression supporte... 29 2.6
At2g20310.1 68415.m02372 expressed protein 29 2.6
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 29 2.6
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 29 2.6
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 29 2.6
At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family pr... 28 3.5
At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmoti... 28 3.5
At3g20640.1 68416.m02612 ethylene-responsive protein -related co... 28 3.5
At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family pr... 28 3.5
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 28 3.5
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 28 3.5
At5g16500.1 68418.m01928 protein kinase family protein contains ... 28 4.6
At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family pr... 28 4.6
At3g21480.1 68416.m02710 transcription activation domain-interac... 28 4.6
At1g17820.1 68414.m02206 expressed protein 28 4.6
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein... 27 6.1
At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family pr... 27 6.1
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 27 6.1
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 27 6.1
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2... 27 6.1
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2... 27 6.1
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 6.1
At1g57680.2 68414.m06546 expressed protein 27 6.1
At1g57680.1 68414.m06545 expressed protein 27 6.1
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein 27 6.1
At1g14687.1 68414.m01755 zinc finger homeobox family protein / Z... 27 6.1
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 27 6.1
At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family pr... 27 8.0
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr... 27 8.0
At4g29550.1 68417.m04214 expressed protein contains Pfam profile... 27 8.0
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila... 27 8.0
At3g29763.1 68416.m03760 hypothetical protein 27 8.0
At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family pr... 27 8.0
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 27 8.0
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 27 8.0
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot... 27 8.0
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 52.0 bits (119), Expect = 2e-07
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGY 371
GS + + H + S EDE++ S++S K R A H Q+E+KRRD I +
Sbjct: 174 GSHDNTIDDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRM 233
Query: 372 DSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+LQ+LVP +TD KA++L + I+Y++ L
Sbjct: 234 KTLQKLVPNSSKTD-------KASMLDEVIEYLKQL 262
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 51.6 bits (118), Expect = 3e-07
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +3
Query: 252 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 422
T +D + NK+S S RR E H +E++RRD I + +LQEL+P C +TD
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 423 YKHSKAAVLQKSIDYIQYL 479
KA++L ++IDY++ L
Sbjct: 291 ----KASILDEAIDYLKSL 305
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 51.6 bits (118), Expect = 3e-07
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +3
Query: 252 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 422
T +D + NK+S S RR E H +E++RRD I + +LQEL+P C +TD
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 423 YKHSKAAVLQKSIDYIQYL 479
KA++L ++IDY++ L
Sbjct: 291 ----KASILDEAIDYLKSL 305
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +3
Query: 279 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKS 458
N+ S + + R E H +E++RRD I + +LQEL+P C +TD KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 459 IDYIQYL 479
IDY++ L
Sbjct: 300 IDYLKSL 306
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +3
Query: 279 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKS 458
N+ S + + R E H +E++RRD I + +LQEL+P C +TD KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 459 IDYIQYL 479
IDY++ L
Sbjct: 300 IDYLKSL 306
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 47.6 bits (108), Expect = 5e-06
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Frame = +3
Query: 207 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 362
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 363 KGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ +LQEL+P C + D KA++L ++I+Y++ L
Sbjct: 361 EKMRALQELIPNCNKVD-------KASMLDEAIEYLKSL 392
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 47.6 bits (108), Expect = 5e-06
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Frame = +3
Query: 207 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 362
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 363 KGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ +LQEL+P C + D KA++L ++I+Y++ L
Sbjct: 361 EKMRALQELIPNCNKVD-------KASMLDEAIEYLKSL 392
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Frame = +3
Query: 231 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 410
PSS+ + D ++KASA+ R H+ EQ+RR I + + L+EL+P +Q
Sbjct: 25 PSSNTTVHSNRDSKENDKASAI------RSKHSVTEQRRRSKINERFQILRELIPNSEQ- 77
Query: 411 DASGYKHSKAAVLQKSIDYIQYL 479
K A+ L + IDY+QYL
Sbjct: 78 -----KRDTASFLLEVIDYVQYL 95
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Frame = +3
Query: 204 GSIQNIHQTPSSSNQNTEDEDDSGDNKASA---LSFKERRREAHTQAEQKRRDAIKKGYD 374
G I+ T S+N + E +D A ++ ++R E H E+KRRD K
Sbjct: 191 GDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMR 250
Query: 375 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+LQ+L+P C YK KA++L ++I Y++ L
Sbjct: 251 ALQDLLPNC-------YKDDKASLLDEAIKYMRTL 278
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +3
Query: 234 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 410
+++++ +++ + S S K R E H +E+KRRD I + +LQEL+P C ++
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 317
Query: 411 DASGYKHSKAAVLQKSIDYIQYL 479
D KA++L ++I+Y++ L
Sbjct: 318 D-------KASMLDEAIEYMKSL 333
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +3
Query: 234 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 410
+++++ +++ + S S K R E H +E+KRRD I + +LQEL+P C ++
Sbjct: 187 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 246
Query: 411 DASGYKHSKAAVLQKSIDYIQYL 479
D KA++L ++I+Y++ L
Sbjct: 247 D-------KASMLDEAIEYMKSL 262
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/95 (30%), Positives = 49/95 (51%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 374
GS G Q Q+ ++++ T K + + + + H+ AE+ RR+ I +
Sbjct: 100 GSGGQTQT--QSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMK 157
Query: 375 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
SLQELVP +TD KA++L + IDY+++L
Sbjct: 158 SLQELVPNGNKTD-------KASMLDEIIDYVKFL 185
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +3
Query: 213 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 380
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 381 QELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
Q+LVP C + KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDKVT------GKAVMLDEIINYVQSL 279
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +3
Query: 213 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 380
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 381 QELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
Q+LVP C + KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDKVT------GKAVMLDEIINYVQSL 279
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASA---------LSFKERRREA---HTQAE 338
GS G ++ SS E D GDNK A + + RR +A H+ AE
Sbjct: 147 GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAE 206
Query: 339 QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ RR+ I + LQ+LVP C + KA +L + I+Y+Q L
Sbjct: 207 RARREKISERMTLLQDLVPGCNRIT------GKAVMLDEIINYVQSL 247
>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 337
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 216 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 383
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 384 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++VP C + KA +L + I+Y+Q L
Sbjct: 216 DIVPGCNKVT------GKAGMLDEIINYVQCL 241
>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 335
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 216 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 383
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 384 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++VP C + KA +L + I+Y+Q L
Sbjct: 216 DIVPGCNKVT------GKAGMLDEIINYVQCL 241
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 41.1 bits (92), Expect = 5e-04
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 186 SRCGSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDA 356
S G+SG+ + + S + DE S + S+ S +R R E H +E++RR
Sbjct: 153 SSVGASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSR 212
Query: 357 IKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
I + +LQ L+P +TD KA++L ++I+Y++ L
Sbjct: 213 INEKMKALQSLIPNSNKTD-------KASMLDEAIEYLKQL 246
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 40.7 bits (91), Expect = 6e-04
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Frame = +3
Query: 195 GSSGSIQNIH-QTPSSSNQNTEDEDDSGDNKA----SALSFKERRREA---HTQAEQKRR 350
GS G + N QT + + +G A S + RR +A H+ AE+ RR
Sbjct: 98 GSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRR 157
Query: 351 DAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ I + +LQELVP +TD KA++L + IDY+++L
Sbjct: 158 ERIAERMKALQELVPNGNKTD-------KASMLDEIIDYVKFL 193
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ H+ AE+ RR+ I + SLQELVPT +TD +AA++ + +DY+++L
Sbjct: 153 DPHSIAERLRRERIAERIRSLQELVPTVNKTD-------RAAMIDEIVDYVKFL 199
>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 340
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +3
Query: 243 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDAS 419
NQ TE+ DS +K S R H +E++RR I + +LQEL+P C +TD S
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRS 313
>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 413
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +3
Query: 243 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDAS 419
NQ TE+ DS +K S R H +E++RR I + +LQEL+P C +TD S
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRS 313
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ H+ AE+ RR+ I + +LQELVPT +TD +AA++ + +DY+++L
Sbjct: 155 DPHSIAERLRRERIAERIRALQELVPTVNKTD-------RAAMIDEIVDYVKFL 201
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 315 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
R H++ EQ+RR I + + SL +++P Q + K KA+ L + I+YI +L
Sbjct: 35 RSKHSETEQRRRSKINERFQSLMDIIPQNQ----NDQKRDKASFLLEVIEYIHFL 85
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +3
Query: 237 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 407
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQ++VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 408 TDASGYKHSKAAVLQKSIDYIQYL 479
KA +L + I+Y+Q L
Sbjct: 180 VT------GKAGMLDEIINYVQSL 197
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +3
Query: 237 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 407
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQ++VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 408 TDASGYKHSKAAVLQKSIDYIQYL 479
KA +L + I+Y+Q L
Sbjct: 180 VT------GKAGMLDEIINYVQSL 197
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 231 PSSSNQNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKKGYDSLQELVPTCQ 404
P++ ++ E+ G +A + ++R R E H AE++RR+ I + +LQ+L+P C
Sbjct: 227 PATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCN 286
Query: 405 QTDA 416
+ ++
Sbjct: 287 KVES 290
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERR---REAHTQAEQKRRDAIKK 365
G+S S N+ + S S EDED++G +A A KE++ REA QAE+ R++
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQEREAQRQAEEATRESRNT 121
Query: 366 GYDSLQEL 389
D E+
Sbjct: 122 KQDWYAEM 129
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERR---REAHTQAEQKRRDAIKK 365
G+S S N+ + S S EDED++G +A A KE++ REA QAE+ R++
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQEREAQRQAEEATRESRNT 121
Query: 366 GYDSLQEL 389
D E+
Sbjct: 122 KQDWYAEM 129
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 237 SSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGYDSLQELVPTCQQTD 413
S Q+TE ++ +A + + R A H ++E++RRD I + +LQ+L+PT + D
Sbjct: 141 SETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKAD 200
Query: 414 ASGYKHSKAAVLQKSIDYIQYL 479
K ++L I++++ L
Sbjct: 201 -------KVSILDDVIEHLKQL 215
>At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor GBOF-1, Tulipa
gesneriana, EMBL:AF185269; contains Pfam profile
PF00010: Helix-loop-helix DNA-binding domain
Length = 297
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ H+ AE+ RR+ I + SLQELVP +TD KA++L + I+Y+++L
Sbjct: 108 DPHSIAERLRRERIAERMKSLQELVPNTNKTD-------KASMLDEIIEYVRFL 154
>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 409
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 315 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
R H+ EQ+RR I + L++L+P Q K KA+ L + I+YIQ+L
Sbjct: 158 RSKHSATEQRRRSKINDRFQMLRQLIPNSDQ------KRDKASFLLEVIEYIQFL 206
>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 301
Score = 37.9 bits (84), Expect = 0.004
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKK 365
G+ S + S N E K + + + RR +A H+ AE+ RR+ I +
Sbjct: 106 GNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISE 165
Query: 366 GYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
LQELVP C + KA +L + I+Y+Q L
Sbjct: 166 RMRLLQELVPGCNKIT------GKAVMLDEIINYVQSL 197
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/79 (27%), Positives = 43/79 (54%)
Frame = +3
Query: 243 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 422
+Q +++ + G +A S + + H AE+KRR+ + + + +L LVP ++ D
Sbjct: 126 HQKSDEFNRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMD--- 182
Query: 423 YKHSKAAVLQKSIDYIQYL 479
KA+VL ++ +I+YL
Sbjct: 183 ----KASVLGDALKHIKYL 197
>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 485
Score = 37.5 bits (83), Expect = 0.006
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Frame = +3
Query: 213 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 368
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 268 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 327
Query: 369 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
LQ+LVP C + KA +L + I+Y+Q L
Sbjct: 328 MKFLQDLVPGCNKVT------GKAVMLDEIINYVQSL 358
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 37.5 bits (83), Expect = 0.006
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Frame = +3
Query: 213 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 368
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 269 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 328
Query: 369 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
LQ+LVP C + KA +L + I+Y+Q L
Sbjct: 329 MKFLQDLVPGCNKVT------GKAVMLDEIINYVQSL 359
>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
reduced phytochrome signaling (REP1) / basic
helix-loop-helix FBI1 protein (FBI1) / reduced
sensitivity to far-red light (RSF1) / bHLH protein 26
(BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
in far-red 1 (bHLH-like protein HFR1) (Reduced
phytochrome signaling) (Basic helix-loop-helix FBI1
protein) (Reduced sensitivity to far-red light)
[Arabidopsis thaliana]
Length = 292
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/90 (25%), Positives = 42/90 (46%)
Frame = +3
Query: 210 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQEL 389
++N H+ P DD + + R+ + ++K + ++K LQ+L
Sbjct: 105 LRNKHENPKKRRIQVLSSDDESEEFTREVPSVTRKGSKRRRRDEKMSNKMRK----LQQL 160
Query: 390 VPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
VP C +TD K +VL K+I+Y++ L
Sbjct: 161 VPNCHKTD-------KVSVLDKTIEYMKNL 183
>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 210
Score = 36.7 bits (81), Expect = 0.010
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +3
Query: 198 SSGSIQNIHQTPSSSNQNTE--DEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY 371
S G++ ++ S + Q+ + SG + ++L + + H +E+KRR I +
Sbjct: 55 SGGAVSSVGYGVSETGQDKYAFEHKRSGAKQRNSLK-RNIDAQFHNLSEKKRRSKINEKM 113
Query: 372 DSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+LQ+L+P +TD KA++L ++I+Y++ L
Sbjct: 114 KALQKLIPNSNKTD-------KASMLDEAIEYLKQL 142
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 36.7 bits (81), Expect = 0.010
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Frame = +3
Query: 207 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKE------RRREA---HTQAEQKRRDAI 359
S + I + S + + +++GD S +K+ RR +A H+ AE+ RR+ I
Sbjct: 221 SSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKI 280
Query: 360 KKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ LQ+LVP C + KA +L + I+Y+Q L
Sbjct: 281 SERMKLLQDLVPGCNKVT------GKALMLDEIINYVQSL 314
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +3
Query: 273 GDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQ 452
G +A +L+ + + H AE+KRR+ + + + +L L+P ++ D KA+VL
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMD-------KASVLG 162
Query: 453 KSIDYIQYL 479
+I +I+YL
Sbjct: 163 DAIKHIKYL 171
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 36.3 bits (80), Expect = 0.013
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Frame = +3
Query: 195 GSSGSIQNI-HQTPSSSNQNTEDEDDSGDN--KASALSFKERRREA---HTQAEQKRRDA 356
GS+ SI+ + H+ N + D K + + RR +A H+ AE+ RR+
Sbjct: 134 GSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREK 193
Query: 357 IKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
I + LQ+LVP C + KA +L + I+Y+Q L
Sbjct: 194 ISERMKFLQDLVPGCDKIT------GKAGMLDEIINYVQSL 228
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 35.5 bits (78), Expect = 0.023
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 237 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 407
S TE + + + + RR +A H+ AE+ RR+ I + LQ+LVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 408 TDASGYKHSKAAVLQKSIDYIQYL 479
KA VL + I+YIQ L
Sbjct: 175 V------IGKALVLDEIINYIQSL 192
>At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family
protein
Length = 264
Score = 35.5 bits (78), Expect = 0.023
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 237 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 407
S TE + + + + RR +A H+ AE+ RR+ I + LQ+LVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 408 TDASGYKHSKAAVLQKSIDYIQYL 479
KA VL + I+YIQ L
Sbjct: 175 V------IGKALVLDEIINYIQSL 192
>At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 379
Score = 35.1 bits (77), Expect = 0.030
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +3
Query: 234 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 413
SS+ +N E++ + + + ++H+ AE+ RR+ I LQELVP C +
Sbjct: 185 SSTKKNKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQ 244
Query: 414 ASGYKHSKAAVLQKSIDYIQYL 479
+ A VL + I+++Q L
Sbjct: 245 GT------ALVLDEIINHVQSL 260
>At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 281
Score = 34.7 bits (76), Expect = 0.040
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Frame = +3
Query: 171 ICNMYSRCGSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRREA---HTQAE 338
+C S G GS++ +T S ++ + + + + RR +A H+ AE
Sbjct: 110 LCGSESGNGD-GSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAE 168
Query: 339 QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+ RR+ I + +LQ+++P C + KA VL + I+YIQ L
Sbjct: 169 RARREKISEKMTALQDIIPGCNKI------IGKALVLDEIINYIQSL 209
>At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 426
Score = 34.3 bits (75), Expect = 0.053
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 234 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQ-T 410
SS+ +N E++ + + + ++H+ AE+ RR+ I LQELVP C + T
Sbjct: 185 SSTKKNKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGT 244
Query: 411 DASG 422
D G
Sbjct: 245 DFGG 248
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 34.3 bits (75), Expect = 0.053
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +3
Query: 198 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKG 368
SSG + + SS + + +S +K + + RR +A H+ AE+ RR+ I
Sbjct: 153 SSGKRKEREKKVKSSTKKNKSSVES--DKLPYVHVRARRGQATDNHSLAERARREKINAR 210
Query: 369 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
LQELVP C + + A VL + I+++Q L
Sbjct: 211 MKLLQELVPGCDKIQGT------ALVLDEIINHVQTL 241
>At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 33.9 bits (74), Expect = 0.070
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++H+ AE+ RR+ I + +LQ LVP C + KA +L + I+Y+Q L
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKVT------GKALMLDEIINYVQTL 192
>At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 33.9 bits (74), Expect = 0.070
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++H+ AE+ RR+ I + +LQ LVP C + KA +L + I+Y+Q L
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKVT------GKALMLDEIINYVQTL 192
>At4g01720.1 68417.m00223 WRKY family transcription factor similar
to wild oat DNA-binding protein ABF2, GenBank accession
number Z48431
Length = 489
Score = 33.9 bits (74), Expect = 0.070
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 374
GSSG + S ++ D DD + S L + R + D + + Y+
Sbjct: 69 GSSGFNDGLGLVNSCHGTSSNDGDDKTKTQISRLKLELERLHEENHKLKHLLDEVSESYN 128
Query: 375 SLQELVPTCQQTDASGYKHSK 437
LQ V +QT G H +
Sbjct: 129 DLQRRVLLARQTQVEGLHHKQ 149
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++H+ AE+ RR+ I + LQ+LVP C + KA +L + I+Y+Q L
Sbjct: 310 DSHSLAERVRREKIGERMKLLQDLVPGCNKVT------GKALMLDEIINYVQSL 357
>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
Dehydrin ERD14 {Arabidopsis thaliana}
Length = 185
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 210 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY-DSLQE 386
++ +H++ SSS+ ++E+E G+ + K+ +++ T+ E K + KKG+ + L+E
Sbjct: 71 LEKLHRSDSSSSSSSEEEGSDGEKRKK----KKEKKKPTTEVEVKEEE--KKGFMEKLKE 124
Query: 387 LVP 395
+P
Sbjct: 125 KLP 127
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 31.5 bits (68), Expect = 0.37
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLXXXXXXX 503
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L
Sbjct: 417 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYISELKSKLQKAE 469
Query: 504 XXXNALRKDV 533
L+K +
Sbjct: 470 SDKEELQKQI 479
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 31.5 bits (68), Expect = 0.37
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Frame = +3
Query: 228 TPSSSNQNTEDEDDSGDNKASALSF-KERRREAHTQ-------AEQKRRDAIKKGYDSLQ 383
T N DE+++ + + F KE RR+ + E++RR + + Y++L+
Sbjct: 175 TTQRDESNVGDENNNAQFDSGIIEFSKEIRRKGRGKRKNKPFTTERERRCHLNERYEALK 234
Query: 384 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
L+P+ + D +A++LQ IDYI L
Sbjct: 235 LLIPSPSKGD-------RASILQDGIDYINEL 259
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 162 ITDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDN 281
+ DI S G+S S QN Q SSS Q +D+DD D+
Sbjct: 770 VLDILQSLSNQGTSNSTQN-GQMASSSQQPNDDDDDDDDD 808
>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 31.5 bits (68), Expect = 0.37
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++H+ AE+ RR+ I + LQ+LVP C + A G A +L IDY++ L
Sbjct: 113 DSHSLAERVRREKINERLKCLQDLVPGCYK--AMG----MAVMLDVIIDYVRSL 160
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +3
Query: 264 DDSGDNKASALSFKER--RREA--HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKH 431
D+SG+N+ + R EA H +AE++RR+ + + + +L+ +VP + D
Sbjct: 410 DESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMD------ 463
Query: 432 SKAAVLQKSIDYIQYL 479
KA++L ++ YI L
Sbjct: 464 -KASLLGDAVSYINEL 478
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/77 (18%), Positives = 40/77 (51%)
Frame = +3
Query: 225 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQ 404
++ + ++ ED+ + DNK+ ++ ++ H +++ ++++ KK + L++ +
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKK 1131
Query: 405 QTDASGYKHSKAAVLQK 455
+ D + K S+ L K
Sbjct: 1132 KEDKNEKKKSQHVKLVK 1148
>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 258
Score = 31.1 bits (67), Expect = 0.49
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = +3
Query: 228 TPSSSNQNTED----EDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYD 374
T SN N D + S D KAS S K + R A +KRR+ I +
Sbjct: 135 TVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKINERLK 194
Query: 375 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+LQ LVP + D S +L++++ Y+++L
Sbjct: 195 TLQNLVPNGTKVDIS-------TMLEEAVHYVKFL 222
>At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 145
Score = 31.1 bits (67), Expect = 0.49
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 327 TQAEQKRRDAIKKGYDSLQELVPTCQQTD 413
T ++KRR+ I++ ++L+E+ P C Q+D
Sbjct: 72 TLLKKKRRERIRRQLETLKEITPNCPQSD 100
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 31.1 bits (67), Expect = 0.49
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 225 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQ 404
QTPS S Q +++ D A + KE E TQAE+ + + K+ ++E V +
Sbjct: 8 QTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKE-ESPVEEAVSVVE 66
Query: 405 QTDASGYKHSKAA 443
+ S + ++ A
Sbjct: 67 EKSESAPESTEVA 79
>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
protein
Length = 592
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L
Sbjct: 416 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYINEL 460
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 30.3 bits (65), Expect = 0.86
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
H E+KRR+ + + + +L++++P+ + D K ++L +I+Y+Q L
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKID-------KVSILDDTIEYLQEL 486
>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
protein similar to the myc family of helix-loop-helix
transcription factors; contains Pfam profile PF00010:
Helix-loop-helix DNA-binding domain; PMID: 12679534
Length = 423
Score = 30.3 bits (65), Expect = 0.86
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 291 ALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSI 461
A + KE+ A H +AE++RR+ + + +L+ +VP + D KA++L ++
Sbjct: 236 AAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMD-------KASLLSDAV 288
Query: 462 DYIQYL 479
YI+ L
Sbjct: 289 SYIESL 294
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 231 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELV 392
P N N DED S DN+ S T A + ++ K+G D +++++
Sbjct: 377 PDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVM 430
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 30.3 bits (65), Expect = 0.86
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 222 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 362
HQ SSS Q ++ E+DSG+ S ++ H + ++ R ++
Sbjct: 191 HQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHYERPRSDLE 237
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 30.3 bits (65), Expect = 0.86
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 276 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQK 455
D+ + E +H AE++RRD I +L++LVP + D KAA+L
Sbjct: 51 DDCVGGIEKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLD-------KAALLAT 103
Query: 456 SIDYIQYL 479
I+ ++ L
Sbjct: 104 VIEQVKEL 111
>At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 30.3 bits (65), Expect = 0.86
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 30.3 bits (65), Expect = 0.86
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 30.3 bits (65), Expect = 0.86
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +3
Query: 216 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 377
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 378 LQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
L++ + + QQ + K A+VLQ++I+YI++L
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 30.3 bits (65), Expect = 0.86
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +3
Query: 216 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 377
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 378 LQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
L++ + + QQ + K A+VLQ++I+YI++L
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 29.9 bits (64), Expect = 1.1
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +3
Query: 171 ICNMYSRCGSSGSIQNIHQTP-SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR 347
I N+ SR S+ ++ P + N + SG N ++ + A + R
Sbjct: 160 IVNIGSRHESTSPKLAGNKRPFTGENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNR 219
Query: 348 RDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
R+ I + LQELVP G K +L+K+I Y+++L
Sbjct: 220 RERISERLKVLQELVPN-------GTKVDLVTMLEKAIGYVKFL 256
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI+ L
Sbjct: 396 HVEAERQRREKLNQRFYALRSVVPNISKMD-------KASLLGDAISYIKEL 440
>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
protein contains Pfam profile PF00010: Helix-loop-helix
DNA-binding domain; PMID: 12679534; putative bHLH084
transcription factor
Length = 328
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 261 EDDSGDNKASALSFKERR-REAHTQAE----QKRRDAIKKGYDSLQELVPTCQQTDASGY 425
++D D+KA L+ K R R A T + +KRR+ I + LQ LVP + D S
Sbjct: 222 KEDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDIS-- 279
Query: 426 KHSKAAVLQKSIDYIQYL 479
+L++++ Y+++L
Sbjct: 280 -----TMLEEAVQYVKFL 292
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 374
G G I++ + PS ED+ D G K S + + ++ + ++K++D K G +
Sbjct: 121 GYGGRIESDYVKPSYGGH--EDDGDDGHKKHSGKDYDDGDEKSKKKEKEKKKDKKKDGNN 178
Query: 375 S 377
S
Sbjct: 179 S 179
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 225 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY-----DSLQEL 389
QTPS++ +EDE+ S + S + E TQAE + Y DS+ E+
Sbjct: 272 QTPSATGSESEDEEVSTSQEYSGETGSSSGSEWETQAENDTESKSESSYPPQNDDSVSEV 331
Query: 390 VPTCQQTD 413
+ TD
Sbjct: 332 STSPPHTD 339
>At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family
protein similar to unknown protein (pir||T04030)
Length = 247
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +3
Query: 276 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQK 455
+ K + ++ ++ R H E+ RR+ K+ Y +L L+P + D K ++++K
Sbjct: 74 EEKKNTVAPEKERSRRHMLKERTRREKQKQSYLALHSLLPFATKND-------KNSIVEK 126
Query: 456 SIDYIQYL 479
++D I L
Sbjct: 127 AVDEIAKL 134
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/61 (27%), Positives = 21/61 (34%)
Frame = +3
Query: 249 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYK 428
N D D G K + +ER RE EQ DA S E + G+
Sbjct: 20 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDAAAAAARSADEDDDNDSEDGNGGFM 79
Query: 429 H 431
H
Sbjct: 80 H 80
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/61 (27%), Positives = 21/61 (34%)
Frame = +3
Query: 249 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYK 428
N D D G K + +ER RE EQ DA S E + G+
Sbjct: 93 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDAAAAAARSADEDDDNDSEDGNGGFM 152
Query: 429 H 431
H
Sbjct: 153 H 153
>At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing
protein weak similarity to NUC-2 [Neurospora crassa]
GI:1399532, xenotropic and polytropic murine leukemia
virus receptor [Mus musculus castaneus] GI:6093320;
contains Pfam profile PF03105: SPX domain
Length = 245
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +1
Query: 133 DKILRFQLYKSLIYATCTLGVVAVGLYKTSIKLRRLLIKIQKTKMTVEIIRHRHLVLKKG 312
DK LR++ K+LI + + + VGL I Q+ II H+ L +
Sbjct: 20 DKFLRYKELKNLISSPAPVESIFVGLLNAEIDKFNAFFVEQEEDF---IIHHKELQYR-- 74
Query: 313 EEKLTPKQNRNEEM------PLRKDMIHF 381
++L K N+EM +RKD+++F
Sbjct: 75 IQRLVEKCGHNDEMSRENISEIRKDIVNF 103
>At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 368
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++H++AE++RR+ I L+ ++P +TD KA++L + I +++ L
Sbjct: 176 KSHSEAERRRRERINNHLAKLRSILPNTTKTD-------KASLLAEVIQHVKEL 222
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 467
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 312 RREA--HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYI 470
R EA H +AE++RR+ + + + +L+ +VP + D KA++L +I YI
Sbjct: 315 REEALNHVEAERQRREKLNQRFYALRAVVPNISKMD-------KASLLADAITYI 362
>At3g30725.1 68416.m03909 expressed protein ; expression supported
by MPSS
Length = 111
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 222 HQTPSSSNQNT--EDEDDSGDNKASALS 299
HQ PSSS+ N ++EDD GD A ++
Sbjct: 39 HQKPSSSSNNNHMDEEDDVGDKDAKPIT 66
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 165 TDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDD 269
TDI + S G + + ++ P+SSNQ ED+DD
Sbjct: 45 TDIVEVLSEV--RGGVNSQYRKPNSSNQALEDDDD 77
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 228 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPT 398
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ +E T
Sbjct: 691 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 742
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 228 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPT 398
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ +E T
Sbjct: 903 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 954
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 315 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
++ + A + RR+ I + LQELVP G K +L+K+I Y+++L
Sbjct: 203 KDPQSLAAKNRRERISERLKILQELVPN-------GTKVDLVTMLEKAISYVKFL 250
>At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 333 AEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLL 482
+E+ RR + + +L+ +VP + D KA+V++ SIDY+Q L+
Sbjct: 58 SERNRRQKLNQRLFALRSVVPNISKLD-------KASVIKDSIDYMQELI 100
>At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmotic
stress-responsive proline dehydrogenase (POX) (PRO1)
(ERD5) nearly identical to SP|P92983 Proline oxidase,
mitochondrial precursor (EC 1.5.3.-) (Osmotic stress-
induced proline dehydrogenase) [Arabidopsis thaliana];
identical to cDNA proline oxidase precursor GI:1817543
Length = 499
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 333 AEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQY 476
AE++R ++ + +QE+ CQ+++ ++ +LQ +IDY+ Y
Sbjct: 252 AEEERE--LEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAY 297
>At3g20640.1 68416.m02612 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 454
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 234 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 413
S ++ +E G N + + + A KR++ + +LQ+LV +TD
Sbjct: 309 SEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTD 368
Query: 414 ASGYKHSKAAVLQKSIDYIQYL 479
A A+VL ++I+YI++L
Sbjct: 369 A-------ASVLSEAIEYIKFL 383
>At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 314
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
H AE+KRR + + +L L+P ++TD KA VL+ +I +++ L
Sbjct: 127 HVLAERKRRQKLNERLIALSALLPGLKKTD-------KATVLEDAIKHLKQL 171
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/88 (21%), Positives = 33/88 (37%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 374
GS S H S + +DD +++K+R H IK+ +
Sbjct: 800 GSMPSPGTTHTGSSRRQSSRATDDDPASVSREVMAYKQRIGGLHFSKSASPASVIKRNGN 859
Query: 375 SLQELVPTCQQTDASGYKHSKAAVLQKS 458
E P + D + YK S ++ + +S
Sbjct: 860 HSHEAKPFSRVIDNNCYKSSSSSQMIES 887
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 324 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI L
Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMD-------KASLLGDAIAYINEL 497
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 210 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAE 338
+++IH + S +Q+ +DD+G++ S+L E + E H ++
Sbjct: 593 LEHIHSS-KSEDQSVYSDDDAGESGESSLHRIEAKEEEHISSD 634
>At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 344
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 318 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 413
++H++AE++RR+ I L+ ++P +TD
Sbjct: 134 KSHSEAERRRRERINTHLAKLRSILPNTTKTD 165
>At3g21480.1 68416.m02710 transcription activation
domain-interacting protein-related contains weak
similarity to Pax transcription activation domain
interacting protein PTIP (GI:4336734) [Mus musculus]
Length = 1045
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 243 NQNTEDEDDSGDNKASALSFKERRREAHTQAE 338
N + D DDSG + LS +E R++A+ + +
Sbjct: 128 NSDLSDSDDSGSKAETVLSSEENRQDANEKVK 159
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +3
Query: 195 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 374
GSS + + Q+PS S ++E++D G + + ++ + E+KRR +K
Sbjct: 736 GSSREVSAV-QSPSRSVASSEEDDSRGKKQGRRARMLDLGKKMGEKLEEKRRHMEEKSRQ 794
Query: 375 SLQEL 389
++++
Sbjct: 795 IVEKM 799
>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to unknown protein (emb|CAB88055.1)
Length = 212
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 216 NIHQTPSSSNQNTEDEDDSGDNKASAL-SFKER 311
N+H S S E+ED+S D A +L S KE+
Sbjct: 168 NLHIVESESESEEEEEDESVDKPAESLDSVKEK 200
>At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 379
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 321 AHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 479
+H AE++RR+ + + + +L+ +VP + D K ++L +I Y+ +L
Sbjct: 224 SHVVAERRRREKLNEKFITLRSMVPFVTKMD-------KVSILGDTIAYVNHL 269
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 253 QKTKMTVEIIRHRHLVLKKGEEKLTPKQNRNEE 351
++T+M + RH + +LK +KL + NR +E
Sbjct: 113 KRTQMKAQSERHENQILKSDNDKLRAENNRYKE 145
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 198 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDA 356
SS +N+ Q+ S+S Q ++D +G N S E+RR+ + + R A
Sbjct: 330 SSRKNKNVDQSCSTSKQQSKDFPAAGSN-ISESQLDEQRRKNNEEVSHNNRSA 381
>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +3
Query: 177 NMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRR 350
N C + G I + S NQ+ D + S L KE+R T + E ++
Sbjct: 242 NDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKT 301
Query: 351 DAIKKGYDSLQELVPTCQQ 407
+ K+G + L + T Q
Sbjct: 302 EEPKQGEEKLSSVSTTTSQ 320
>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +3
Query: 177 NMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRR 350
N C + G I + S NQ+ D + S L KE+R T + E ++
Sbjct: 242 NDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKT 301
Query: 351 DAIKKGYDSLQELVPTCQQ 407
+ K+G + L + T Q
Sbjct: 302 EEPKQGEEKLSSVSTTTSQ 320
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 27.5 bits (58), Expect = 6.1
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = +1
Query: 190 GVVAVGLYKTSIKLRRLLIKIQKTKMTVEIIRHRHLVLKKGEEKLTPKQNRNEEMPLRKD 369
G ++ + T +R+LL KI +V+ I R + K +E+L P+ + L
Sbjct: 584 GAESIKIDATRAAIRKLLTKIDVCIRSVDSISSR--IHKLRDEELQPQL-----IQLIHG 636
Query: 370 MIHFKSWFLPVNKLMHQAISTVKLQSFKNP*TISNTYYSKGVVKRKNEMR 519
+I L ++ QAI K++S K T+ N S ++ + E+R
Sbjct: 637 LIRMWRSMLRCHQKQFQAIRESKVRSLKANTTLQNDSGSTAILDLEIELR 686
>At1g57680.2 68414.m06546 expressed protein
Length = 362
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 416 CISLLTGRNQLLK*IISFLNGISSFLFCL 330
C+S+LT ++++ +SFL +S F FC+
Sbjct: 256 CLSVLTAADKIIFEALSFLAFLSLFCFCV 284
>At1g57680.1 68414.m06545 expressed protein
Length = 362
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 416 CISLLTGRNQLLK*IISFLNGISSFLFCL 330
C+S+LT ++++ +SFL +S F FC+
Sbjct: 256 CLSVLTAADKIIFEALSFLAFLSLFCFCV 284
>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
Length = 890
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 201 SGSIQNIHQTPSSSNQNTEDEDDSGDNKAS-ALSFKERRREAHTQAEQKRRDAIKKGYDS 377
S S+ + + SSS+ +E +G +S + F +RR E ++K+R+ +K
Sbjct: 36 SFSLSTLFSSSSSSSSMENNEATNGSKSSSNSFVFNKRRAEGFDITDKKKRNLERKS--- 92
Query: 378 LQELVPT 398
Q+L PT
Sbjct: 93 -QKLNPT 98
>At1g14687.1 68414.m01755 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 168
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 234 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 362
++ +N E+EDD+ + +RRR++ AEQ R+A+K
Sbjct: 82 TAEERNEEEEDDTEETSTEEKMTVQRRRKSKFTAEQ--REAMK 122
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 27.5 bits (58), Expect = 6.1
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +3
Query: 225 QTPSSSNQNTEDE--DDSGDNKASA-LSFKERRREAHTQAEQKRRDAIKKGYDSLQELVP 395
QTP +D ++ D+KA+ L E + + +E+KRR+ I + L+ +VP
Sbjct: 229 QTPCLIMNKEKDVVVQNANDSKANKKLLPTENFKSKNLHSERKRRERINQAMYGLRAVVP 288
Query: 396 TCQQTDASGYKHSKAAVLQKSIDYIQYLL 482
K +K + ++DYI LL
Sbjct: 289 KIT-------KLNKIGIFSDAVDYINELL 310
>At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 466
Score = 27.1 bits (57), Expect = 8.0
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +3
Query: 177 NMYSRCGSSGSIQNIHQTPSSSNQN--TEDEDDSGDNKASAL-SFKERRREAHTQAEQKR 347
+M +R S + NI+Q + +N T E G S + H +E+KR
Sbjct: 238 SMMTRAMSFYNRLNINQRERFTRENATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKR 297
Query: 348 RDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVL 449
R+ + + + +L+ L+P G K KA+VL
Sbjct: 298 REKLNESFQALRSLLP-------PGTKKDKASVL 324
>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 352
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +3
Query: 255 EDEDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYDSLQELVPTCQQTD 413
ED D+ + AL+ + R + A +KRR+ I + LQ LVP + D
Sbjct: 247 EDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVD 306
Query: 414 ASGYKHSKAAVLQKSIDYIQYL 479
S +L++++ Y+++L
Sbjct: 307 IS-------TMLEEAVHYVKFL 321
>At4g29550.1 68417.m04214 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 358
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 165 TDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA 323
T + + S CG + +++ P S + T+++DD+ D +S+ KE +A
Sbjct: 13 TTVSHDVSSCGFISKEEWLNKHPPSGSGWTDEDDDNDDVFSSSFISKEELSDA 65
>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
to S-receptor kinase gi|392557|gb|AAA62232; contains
Pfam domains PF00954: S-locus glycoprotein family,
PF00069: Protein kinase domain and PF01453: Lectin
(probable mannose binding)
Length = 772
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 168 DICNMYSRCGSSGSIQNIHQTPS 236
D C+ Y+ CGS GS NI+++P+
Sbjct: 278 DSCDQYTLCGSYGSC-NINESPA 299
>At3g29763.1 68416.m03760 hypothetical protein
Length = 505
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 271 VEIIRHRHLVLKKGEEKLTPKQNRNEEMPLRKDMIH 378
++ I ++ V+KK K PK N+ P++KD++H
Sbjct: 78 LKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVH 113
>At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family
protein
Length = 318
Score = 27.1 bits (57), Expect = 8.0
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Frame = +3
Query: 255 EDEDD--SGDNKASALSFKERRREAHTQ------AEQKRRDAIKKGYDSLQELVPTCQQT 410
EDE+D GD+ ++ + + R+ T +E++RR +K +L+ LVP +
Sbjct: 101 EDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKLYALRSLVPNITKM 160
Query: 411 DASGYKHSKAAVLQKSIDYIQYL 479
D KA+++ ++ Y+Q L
Sbjct: 161 D-------KASIVGDAVLYVQEL 176
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 234 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 413
S + +DEDD K S + + + AE++RR + +L+ LVP + D
Sbjct: 289 SDCSDQIDDEDDPKYKKKSGKGSQAK----NLMAERRRRKKLNDRLYALRSLVPRITKLD 344
Query: 414 ASGYKHSKAAVLQKSIDYIQYL 479
+A++L +I+Y++ L
Sbjct: 345 -------RASILGDAINYVKEL 359
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 207 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR-RDAIKKGYDSLQ 383
++Q Q S Q E E++ + + S + +RREA +Q+R RD+I++ Q
Sbjct: 186 NLQEQRQRDSIERQRREAEENLQEQRQRD-SIERQRREAQENLQQQRQRDSIERQRREAQ 244
Query: 384 E 386
E
Sbjct: 245 E 245
>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
Length = 769
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 271 VEIIRH---RHLVLKKGEEKLTPKQNRNEEMPLRKDMIH 378
VE++++ ++ V+KK K PK N+ P++KD++H
Sbjct: 207 VELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVH 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,622,598
Number of Sequences: 28952
Number of extensions: 208458
Number of successful extensions: 1124
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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