Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M19
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.24 
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   5.2  

>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 200 FFSDPGQQIIKGVIARDLDHTDAIASITAGGVGFSYVNIKLKSERGSGLN 349
           F+S PG++ IK ++   L  +       +GG G  Y  + +KS+   G N
Sbjct: 27  FYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMY-QVAIKSKAFQGKN 75


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 310 NVGKSNTSCSYAGDGVCVVQI-TGNYT-LYNLLPRIRKENF 194
           ++ K+ TS  Y+ DG CV+   T  Y  LY+++  +  + F
Sbjct: 569 SLNKTFTSICYSADGSCVLSAGTSKYVCLYDIITGVLIKKF 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,283
Number of Sequences: 5004
Number of extensions: 32993
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)