Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M19
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0239 + 21637451-21638098,21638172-21638714                       29   1.6  
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031...    28   2.8  
07_03_1766 + 29334576-29335790,29335865-29336362                       27   3.7  
08_02_1120 + 24440589-24440619,24441217-24441268,24442551-244427...    27   4.9  
03_05_0233 - 22182565-22182897,22183025-22183193,22183287-221835...    27   6.5  
01_06_0530 + 30035854-30036765                                         26   8.6  

>11_06_0239 + 21637451-21638098,21638172-21638714
          Length = 396

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 150 SCHISLLLKLVPTIKSLHCTTHIKDRRTTNKTGATFI 40
           +CH  LLL     ++ + CT     RR     G T++
Sbjct: 129 TCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWV 165


>04_04_0423 -
           25102305-25102489,25102571-25102717,25103079-25103150,
           25103305-25103327,25103792-25103863,25104064-25104112,
           25104344-25104415,25104880-25104951,25105281-25105352,
           25106569-25106640,25106810-25106881,25106974-25107048,
           25107324-25107470,25107598-25107805,25108361-25108489,
           25108563-25108769
          Length = 557

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 265 VCVVQIT---GNYTLYNLLPRIRKENFFNSFLQWD 170
           +CV ++    G Y+ ++LLPR   +  FN  ++W+
Sbjct: 62  LCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWN 96


>07_03_1766 + 29334576-29335790,29335865-29336362
          Length = 570

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 316 YINVGKSNTSCSYAGDGVCVVQITGN 239
           Y++VG+  T+ +  GDG+    ITGN
Sbjct: 286 YVSVGRPATNVNMIGDGIGKTIITGN 311


>08_02_1120 +
           24440589-24440619,24441217-24441268,24442551-24442731,
           24442829-24443048,24443489-24443640,24443724-24443762,
           24446699-24446705,24447081-24447099,24447100-24447399,
           24448125-24448164,24448417-24448633,24448915-24449060,
           24449131-24449169,24449707-24449805
          Length = 513

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 302 KIQHLLQLCWRW 267
           ++QHL +LCWRW
Sbjct: 18  QMQHLHKLCWRW 29


>03_05_0233 -
           22182565-22182897,22183025-22183193,22183287-22183537,
           22183816-22183966,22184406-22184716
          Length = 404

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 92  VQCKDLIVGTSFNNRLIWQEKADYNAIPLKKRVKEVFFSD 211
           V C  L +G       IW  KA    + LKK  K +F+ +
Sbjct: 295 VICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQE 334


>01_06_0530 + 30035854-30036765
          Length = 303

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 137 LIWQEKADYNAIPLKKRVKEVFFSD--PGQQIIKGVIARDLDHTDAI 271
           ++W +     A+ L+ RV EVF  D  P   I KGV+   LDH   +
Sbjct: 151 VLWAQDRRALALALQSRVAEVFAVDIHPAAAIGKGVL---LDHATGV 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,041
Number of Sequences: 37544
Number of extensions: 204622
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)