Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M19
         (377 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21)                      28   2.9  
SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_30712| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21)
          Length = 260

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 76  ILNVCRAM*RFNCRYKL**QTNMARKSRLQCHPIEEKS*RSFLFGSWAT 222
           +LNVCR    F   +      N AR  +L+ HP+   S  SFL   + T
Sbjct: 73  LLNVCRKFPFFLFHW----HPNKARFEQLENHPVHHPSHESFLIAQYLT 117


>SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 153 FSCHISLLLKLVPTIKSLHCTTHIKDRRTTNKT 55
           +S ++ L L+++P +KS HC +  K  R   ++
Sbjct: 162 YSRYLMLPLEIIPAVKSEHCRSATKRGRLIGRS 194


>SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 153 FSCHISLLLKLVPTIKSLHCTTHIKDRRTTNKT 55
           +S ++ L L+++P +KS HC +  K  R   ++
Sbjct: 62  YSRYLMLPLEIIPAVKSEHCRSATKRGRLIGRS 94


>SB_30712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 113 VGT-SFNNRLIWQEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIARDLDHTDAIASITAG 289
           VGT SF    +W+ K     I LKK   ++  S+  Q   +  I + LDH + + +I   
Sbjct: 21  VGTGSFGTVTLWENKITKEQIVLKKCRLDLSPSNRNQWQKEVEIMKGLDHPNIVKAIDVP 80

Query: 290 GV 295
            V
Sbjct: 81  AV 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,472
Number of Sequences: 59808
Number of extensions: 232544
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)