Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M19
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    26   7.8  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical
           protein F26E4.2 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 146 QEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIAR 247
           QE  D     +KKR  +V +S  G++++ GV+ +
Sbjct: 23  QEDGDEQIFDVKKRKPQVTYSGDGRRMLDGVVEK 56


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 122 SFNNRLIWQEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIARDLDHTDAIAS 277
           S++N  +WQ K+D N   +  +VKE    +   Q+I+  ++  L  T A  S
Sbjct: 644 SYSNAHMWQHKSDINVASVHVQVKE----EANAQMIRHRVSNILKSTGATHS 691


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  PVLFVVLLSLMCVVQCKDLIVGTSFNNRL-IWQEKADYNAIPLKKRVKE 196
           P+LF++L  L+    C D +VG  + +RL  +  + D + +   K V++
Sbjct: 300 PILFIILAGLVLTTTCID-VVGAYYIDRLHFFGRRLDDDPLSWLKEVQQ 347


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 198 TSLTLFFNGMAL*SAFSCHISLLLKLVPTIKS 103
           T++ ++FNG      +SC +SL  K  P+  S
Sbjct: 12  TAILVYFNGFFFSEFWSCEMSLSRKAAPSTSS 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,064,632
Number of Sequences: 27780
Number of extensions: 188635
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)