Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M18
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    28   1.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   1.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   3.6  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.3  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    25   8.3  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 30  NANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALSDHHVYLEG 209
           N+N LA+   + + ++++P+  P+  PD   +++   + T    ++      D     E 
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEK 384

Query: 210 TLLK 221
           TLLK
Sbjct: 385 TLLK 388


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 376 TEASSSDWPPERKVTPGTAAGTVLSK 299
           T A+ S+ PP   VTP TA  + LS+
Sbjct: 342 TSANYSNTPPRNTVTPSTARSSTLSQ 367


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 21/96 (21%), Positives = 39/96 (40%)
 Frame = -3

Query: 565  ATYLPVAARPFALARLMSSCCPTGTLSSLPAQARTTEAWRARP*LNVSTQGLFRSTELIA 386
            +T +PV +       + S+   T ++      + T+ +W A      S+  +  S     
Sbjct: 892  STSIPVTSS--VAPAVTSTGSETSSVVGSGTDSATSSSWTAE----TSSSAITSSVAASV 945

Query: 385  FRLTEASSSDWPPERKVTPGTAAGTVLSKAVTVARA 278
               + +S+S W    +V P TAA    S   ++A A
Sbjct: 946  TPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +3

Query: 216 LKPNMVTAGQSCKKTYTPMDIARATV--TALLRTVPAAVPGVTFLSGGQSEEEASVNLN- 386
           ++  ++  GQ   +TY+  + AR     T+ +  + +++P +  +     EE+AS+N+N 
Sbjct: 54  IQQEILKNGQVRVETYSSSNTARKIFICTSSVSNLASSIPALIKVVTPTKEEDASLNINL 113

Query: 387 AINSVDL 407
           A++S+ L
Sbjct: 114 AVSSLIL 120


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 511 NSSSVPRRTVSQPPANTSPDLS 576
           N  S P  +  QPP NT P +S
Sbjct: 106 NVPSTPSDSTQQPPTNTLPSVS 127


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -3

Query: 583 NDGIDPATYLPVAARPFALARLMSSCCPTGTLSSLPAQART 461
           N  I P    P AARP    R MS+ CP    SSL A+A++
Sbjct: 119 NKRIVPLEREPRAARPPKRPRPMSNYCPK---SSLMARAKS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,587
Number of Sequences: 5004
Number of extensions: 47890
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)