Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M17
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0409 - 8210482-8210770,8210861-8211156                           29   3.1  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    27   7.1  

>03_02_0409 - 8210482-8210770,8210861-8211156
          Length = 194

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 400 LAVDSYNIRWHFAYNTSRNVFYYLISFYRHH 308
           + VDS N+RW FA   S  V  +++S  R H
Sbjct: 125 MPVDSRNVRWSFAVAYSTLVLTFIVSQPRTH 155


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/71 (22%), Positives = 29/71 (40%)
 Frame = +1

Query: 109 CKIMGRLFAIIYRRKRKGT*PRSRICRFMRTKVQYYAIXXXXXXXXXXXXXXXXXXXXVI 288
           CK++    + I+RRK KG+   ++IC  + +    Y +                     I
Sbjct: 136 CKLVLGSSSSIFRRKNKGSKTATKICECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESI 195

Query: 289 NRSTYSNDACR 321
           + ST S+ + R
Sbjct: 196 SSSTVSSPSSR 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,344,785
Number of Sequences: 37544
Number of extensions: 294958
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)