Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M17
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 208 2e-54
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 6e-40
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 109 1e-24
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 107 7e-24
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 31 0.44
SB_10559| Best HMM Match : HAT (HMM E-Value=2) 31 0.77
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7) 29 1.8
SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) 29 1.8
SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14) 29 1.8
SB_10009| Best HMM Match : CPL (HMM E-Value=2.5) 29 1.8
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 28 4.1
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 5.4
SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 208 bits (508), Expect = 2e-54
Identities = 87/139 (62%), Positives = 107/139 (76%)
Frame = +2
Query: 50 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 229
G L RHSQ VP+C LW+GYSLLY+ GNE+AH QDLG GSC+++FSTMPFLF
Sbjct: 1574 GFFLTRHSQTVRVPRCPEDRPPLWEGYSLLYVQGNERAHGQDLGSPGSCIQRFSTMPFLF 1633
Query: 230 CDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLD 409
C++N+VCN ASRND S+WLST +PIPMMPV+ + YI RC VCEV S+V+AVHSQ++
Sbjct: 1634 CNINNVCNLASRNDYSFWLSTPEPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHSQSIT 1693
Query: 410 IPGCPVGWSELWIGYSFVM 466
+P CP GWS LW GYSF+M
Sbjct: 1694 VPSCPSGWSPLWQGYSFLM 1712
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/66 (57%), Positives = 47/66 (71%)
Frame = +2
Query: 332 IVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLAS 511
++ YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GYSF+MHT L+S
Sbjct: 1711 LMPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSS 1770
Query: 512 PGSCLE 529
PGSCLE
Sbjct: 1771 PGSCLE 1776
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Frame = +2
Query: 68 HSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLND 244
HSQ VP C G LW GYS L++ Q L GSC+ F PF+ C
Sbjct: 1731 HSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECHGRG 1790
Query: 245 VCNYASRNDRSYWLSTGQ-------PIPMMPVEGNEIVKYISRCVVCE 367
C+Y + S+WL+T P P GN + + +SRC VC+
Sbjct: 1791 TCHYYG-STYSFWLATVDQNKQFRIPRPETLKAGN-LRERVSRCQVCQ 1836
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 160 bits (389), Expect = 6e-40
Identities = 65/117 (55%), Positives = 88/117 (75%)
Frame = +2
Query: 50 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 229
G +V+HSQ P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+
Sbjct: 1460 GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLY 1519
Query: 230 CDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQ 400
C++ CNYASRND SYWLST +PMMP++ + + YISRC VCE V+AVHS+
Sbjct: 1520 CNIFGKCNYASRNDYSYWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSK 1576
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 170 QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST-GQPIPMMPVE---GNEIV 337
Q LG +GSC+ F PF C C+Y + N S+WL+T P E ++
Sbjct: 1592 QSLGSSGSCLESFRPNPFTECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLL 1650
Query: 338 KYISRCVVC 364
+SRC VC
Sbjct: 1651 SRVSRCQVC 1659
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 383 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLE 529
I HSQT P CP + +LW GYS +++ L GSCL+
Sbjct: 1463 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLK 1510
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 109 bits (263), Expect = 1e-24
Identities = 43/77 (55%), Positives = 60/77 (77%)
Frame = +2
Query: 50 GILLVRHSQREVVPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 229
G +V+HSQ P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+
Sbjct: 64 GFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLY 123
Query: 230 CDLNDVCNYASRNDRSY 280
C++ CNYASRND S+
Sbjct: 124 CNIFGKCNYASRNDYSH 140
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 383 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLE 529
I HSQT P CP + +LW GYS +++ L GSCL+
Sbjct: 67 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLK 114
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 107 bits (256), Expect = 7e-24
Identities = 45/84 (53%), Positives = 54/84 (64%)
Frame = +2
Query: 278 YWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYS 457
YWLST +PMMP++ + + YISRC VCE V+AVHSQ+ +P CP GWS LW GYS
Sbjct: 2 YWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCPGGWSSLWSGYS 61
Query: 458 FVMHTXXXXXXXXXXLASPGSCLE 529
F+MHT L S GSCLE
Sbjct: 62 FLMHTGAGGSGTGQSLGSSGSCLE 85
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Frame = +2
Query: 50 GILLVRHSQREVVPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFL 226
G ++ HSQ +P C G LW GYS L++ Q LG +GSC+ F PF+
Sbjct: 34 GPVMAVHSQSTTLPTCPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLESFRPNPFI 93
Query: 227 FCDLNDVCNYASRNDRSYWLST-GQPIPMMPVE---GNEIVKYISRCVVC 364
C C+Y + N S+WL+T P E ++ +SRC VC
Sbjct: 94 ECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLLSRVSRCQVC 142
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +2
Query: 323 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 469
GN + + C VC VPS S L IP CP GWS + GY H
Sbjct: 55 GNSLQDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEH 101
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 425 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 456
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 469
C VC VPS S L IP CP GWS + GY H
Sbjct: 151 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSH 187
>SB_10559| Best HMM Match : HAT (HMM E-Value=2)
Length = 123
Score = 30.7 bits (66), Expect = 0.77
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 469 MHDKTVTNPQFTPSYWATWN 410
MH +++P+ TPS+W TW+
Sbjct: 23 MHASQISDPRRTPSFWKTWH 42
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGY 454
C VC VPS + + CP GWS + GY
Sbjct: 112 CAVCYVPSR--STQLMIPSVARCPTGWSREYYGY 143
>SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 323 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
G + + C VC VPS S L IP CP GWS + GY
Sbjct: 79 GKSLQNHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 120
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 77 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 108
>SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 125 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 156
>SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 53 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 84
>SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 198 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 229
>SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7)
Length = 118
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35)
Length = 374
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 99 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 130
>SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)
Length = 558
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 84 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 115
>SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)
Length = 321
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 469
C VC V S S L IPG CP GWS + GY H
Sbjct: 225 CAVCYVSSR-----SAKLLIPGTNVCPAGWSREYHGYLMTAH 261
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 82 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 113
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 353 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 454
C VC VPS S L IP CP GWS + GY
Sbjct: 701 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 732
>SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 300
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 140 IIANNRPIILHVLVHIEVQLPFGCVALI 57
I+ NNR + LH+++ V +PF C++L+
Sbjct: 136 IVTNNRVVKLHIIIW-TVTVPFTCLSLL 162
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 140 YIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ 298
Y D + K + + G +G S PFL C L+ C A R S L T +
Sbjct: 364 YWDNSFKCFSTESGQSGCTRIATSPQPFLSCSLSFACLLAHRASVSLDLDTSK 416
>SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 240 LRSQKRNGIVLNFRTHEPAYPRSWLCAFSFPSIY 139
+R R I++ R+ A SW+ +F FPSIY
Sbjct: 127 VRPPHRGQILVTKRSVALAISSSWIFSFMFPSIY 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,053,545
Number of Sequences: 59808
Number of extensions: 361728
Number of successful extensions: 751
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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